Array 1 8904-3622 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAU01000002.1 Actinobaculum suis strain DSM 20639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 8903 29 100.0 32 ............................. AGCGTTCGGTCAGCAGAGAGCCGAAATCCTCG 8842 29 100.0 32 ............................. CAGTGAAGCCGTTGTAGGTGATGCCGCGCGTG 8781 29 100.0 32 ............................. CGCTATCCTTGTCCCGTATCTCAATCCGGAAA 8720 29 100.0 32 ............................. CGAACTAAGCCGCCCTTAGGGTAGAAACCTCC 8659 29 100.0 32 ............................. TGTAGCCCGTGCGTCAACATCATCCGCGTCGA 8598 29 100.0 32 ............................. CAATTTCCGGGCCGATTTCCGCGCTAATACCG 8537 29 100.0 32 ............................. GGCATGCCCGATTTCCAGGGCACCGCGCCGCA 8476 29 100.0 32 ............................. TACTCAGCGAGTATGCAGGGCGTACCGGTGAT 8415 29 100.0 32 ............................. GAGGCTCGCCACGGTCTCGCGAGAAGCGCCCT 8354 29 100.0 32 ............................. ATATTTGACCGAAGCGGTCATTGACGGGGCTG 8293 29 100.0 32 ............................. GGGTCGCTAGCGCTTCCACCGGCGGGCGCGTT 8232 29 100.0 32 ............................. TCTCCGATGACGCAGTGAGCGGATCCCAAAAG 8171 29 100.0 32 ............................. CCCCGCACCTCACTCGTTCTCTTCTTCGACAA 8110 29 100.0 32 ............................. CCGATCGAGGTACTGACAATACGGCCCGGTCA 8049 29 100.0 32 ............................. GGCGGTGATGAACGTACGGCTTCAGAAGGTGG 7988 29 96.6 32 ............................A AACCTTAGCGGCCTTCAAAAATGCGGAAGTCG 7927 29 100.0 32 ............................. TCTCCGCAATCCGGAAGGTTGGCGGTCTGTCG 7866 29 100.0 32 ............................. CGATCGCGGCATACCGGTCTGGATTAGCTTGG 7805 29 100.0 32 ............................. TTCTTCTCCCCTCCTAACAGCTTTTTGCACCC 7744 29 100.0 32 ............................. CAGGCAGGCCCGCTCATCGAAACCCTCAAACA 7683 29 100.0 32 ............................. TGGGAAATATAGGACCGCACCGTATTAGGAGA 7622 29 100.0 32 ............................. GTAGCCGCGGGCGCGTATAGCGGCGGCAAATT 7561 29 100.0 32 ............................. ATGGGCGGTTGTGGGGGTGGTGGTTTGTGGCT 7500 29 100.0 32 ............................. GTAGCCGCGGGCGCGTATAGCGGCGGCAAATT 7439 29 100.0 32 ............................. ATGGGCGGTTGTGGGGGTGGTGGTTTGTGGCT 7378 29 100.0 32 ............................. GTAGCCGCGGGCGCGTATAGCGGCGGCAAATT 7317 29 100.0 32 ............................. ATGGGCGGTTGTGGGGGTGGTGGTTTGTGGCT 7256 29 100.0 32 ............................. GTGGTAGGCGACGAAATTCATTGCCCCCACTA 7195 29 100.0 32 ............................. GGCCTTAATTTTGAGGGTGACCTCCCTATCGA 7134 29 100.0 32 ............................. TAGACCTAATCGACACCCTCGACTATTGCCCC 7073 29 100.0 32 ............................. GTACGGGGATACAGGCCGCCCGAACCGGCTTG 7012 29 100.0 32 ............................. GTATGATCTGGTGGCTGATCGGGGCGGGATTA 6951 29 100.0 32 ............................. CTTGCGATAACCGGCATGGAGCTGGTGAATCG 6890 29 100.0 32 ............................. AGAAAGCGACATCGCCGGGTTGTGGGAACACC 6829 29 96.6 32 ............................T CGTTGCTGTGGGCGGGGCCTATGGGCGGGGAG 6768 29 96.6 32 .............A............... CGAATTAACCGGAATAAACGCGTGCACAGAAT 6707 29 100.0 32 ............................. CGGTAATAGGGTTACGTATACCGCGGCCCAAC 6646 29 100.0 32 ............................. CGCTCGCTCCACCACCTGCCGCGAAACGCCCG 6585 29 100.0 32 ............................. GGGCTTTACGCTCTGCCAGGCCTTCACGGCGC 6524 29 100.0 32 ............................. CTGCTCAGGACGCGGGCGCGCAACACGGCCGG 6463 29 100.0 33 ............................. CCCTAATCAGTGTGCCCGCCGGTAATAGCGGCG 6401 29 100.0 32 ............................. ATGCCATGCTCCACTACAACAAGGACACCCCC 6340 29 100.0 33 ............................. GGGCACTGTCTTTTCTTCCATCTCGGTTTCCTT 6278 29 100.0 32 ............................. CTTCGGGGTCTTTCAATCCCCAGCCACTAACG 6217 29 100.0 32 ............................. CTGCGGTACCGGCATGGCTGGAGACTTCAACA 6156 29 100.0 32 ............................. TTCGAGAACTACGCCTTTGATGTCGTCGGCTA 6095 29 100.0 93 ............................. AGCTCAGGGCCTGATAACTCTCGCCTACCGCAACTCTTCTCCGGGGGTTTTCCCCCCCCCCCCCCGCAGGATCGCGCCAGTCGCCTCCTGCCG 5973 29 100.0 33 ............................. CTCGTAAATTTCGTAGGCTTGCCGGTAGATCCG 5911 29 100.0 32 ............................. CCCCTTCCCACAACTTCCCCAATAGTGAGAAA 5850 29 100.0 32 ............................. CGGCATGGAATTAGTGAATCGCGTGTTGGAGA 5789 29 100.0 32 ............................. GTTCTAGCAAAACCTGTGCAGGTGGCGAGGTC 5728 29 100.0 32 ............................. GTTTACCGGCCTTGCCAGGCAAGTACATTCCG 5667 29 100.0 32 ............................. GTTTACCGGCCTTGCCAGGCAAGTACATTCCG 5606 29 100.0 32 ............................. TCCTTAAAAACGGCCCTAGATCGGTGTTGTGT 5545 29 100.0 32 ............................. CAGTAAAACTCTTTTACGGGCCTATCGCGATG 5484 29 100.0 32 ............................. GGTGATGGTTTATCAGCATTCGGGCCGGGATC 5423 29 100.0 32 ............................. CTGCCAAGCAAGCCCGCCGCCGATCACCATCA 5362 29 100.0 32 ............................. GGTGAAAGCCGGCGTGGATTACAACAGGTTAC 5301 29 100.0 32 ............................. GGGATGAAATGATCCCGCTAGGGCACCATGTT 5240 29 100.0 32 ............................. GGTATTCCGTATTCCTCGGTGCTAGGACATAA 5179 29 100.0 32 ............................. GGCTTGGGGCTAATGTCTCTGATTTCGTGCAG 5118 29 100.0 32 ............................. GGCTTGGGGCTAATGTCTCTGATTTCGTGCAG 5057 29 100.0 32 ............................. TATACGCAGGCGCTTGATGGTAGCCCGCGCGA 4996 29 100.0 32 ............................. ATGTATGAAACGGCTTGCCAAATGTCGGATGA 4935 29 100.0 32 ............................. GTGGTTGGGTCGCGGCGAACACTCACCACGCC 4874 29 100.0 32 ............................. TGGATAATGGATTTTCTTCCGCGACTCACTCC 4813 29 100.0 32 ............................. GCGTAGTGTGCCGCTAGTGATAGTGGACCCGG 4752 29 100.0 34 ............................. AGGGAAACCGCTAAAAGCCTCGAAGAAGCTGGAT 4689 29 100.0 34 ............................. AGGGAAACCGCTAAAAGCCTCGAAGAAGCTGGAT 4626 29 100.0 32 ............................. GGTGCATTTTCGGCCCCGCCGGCTAACTCCAT 4565 29 100.0 32 ............................. AGCTGCCCCTCATGCCGCATCGCAATTTGGCT 4504 29 100.0 32 ............................. GGTGAATGTTATGCACCGCGCCGCATGTTCAT 4443 29 100.0 32 ............................. CAGGAATACAGGTATTTTCTGGGCCGGCTTGC 4382 29 100.0 32 ............................. CGTAGGAAACAAAAAGGACTACGCAACCGTAG 4321 29 100.0 32 ............................. CAGCAACATTCAACGACTGGAGTCCTGCGGGA 4260 29 100.0 32 ............................. ATCGTGTTTTCGCCGGGCCTGGTAAGGCTCAG 4199 29 100.0 32 ............................. GGCCTAACCGACGCGGGAATATGGCCGGATGA 4138 29 100.0 32 ............................. TACAATGTGGCGGACCAAGCCAGCGATCATGC 4077 29 96.6 32 ............................A CACGGAAAAGATTGACGGCACCCGGCGCGTAG 4016 29 100.0 32 ............................. CGGTGATCCGGAAGGTGACCCGCTCGGTGACC 3955 29 100.0 32 ............................. GACATGGCACTCACCTTCCGAGCAATCAGCGT 3894 29 100.0 32 ............................. AGAAAGGAGGTGCGCCTAAGTGGCTTGGCTTA 3833 29 100.0 32 ............................. GTGCGGATCAAAATCTGTAAACGTTCAACCCC 3772 29 96.6 32 ............................A CCGCCCAGCTCGTAAGCTTTATGCGTTGCACG 3711 29 100.0 32 ............................. CAGAGAAACCCTAGGGTTGGCCAGTTTACTTT 3650 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 86 29 99.8 33 CTCTTCTCCGCACGCGCGGAGGTATTTCC # Left flank : CGACGTCGGCTGCGTAAGGAAATACATCGGCAAAATGTGTTGCCGACTATGCTTGATGTTCTAATGGAGATCTTGGAGCCGCATCTGCCGCATCGCGACGATGACAGGCTTCTTGATGATTCAGGGGAAGTGCCAGGGCATATGCAGTATGGCAAGGATGAAGAATAGTGTTTGCAGTCATTCAGCTTTCCGCAGTGCCTGAGCACGTACATGGATATGTGAGTAGATTCCTTTCCGAAGTGAGCTCGGGGCTTTACGTGGGCGTTATTTCGCGCAATGTTAAGGAGCAGCTCTGGGAACGCCTCAGCACAGTAACCGGAGAGGGTTCCGCAGTCTTGATCTACAACGATTCTTCCCGTGAGCAAGGATTTGGAATTGAAATGAGCGGGCGGCAAGCCTGCAAGGCACTCGACTTCGACGGCTTGACGCTTTTTGCTTCGCGCCCCGGTAGGATTAACGAAAATTGGGCGAGCGGCCGATAAAACCGCAGGTCATTTAGT # Right flank : CAGTGTTGCAACCGCATTAGCCGCATCGCCCGGGGTTTTGTAATCCTCCTTGAAGTTCACGTTGCTCGTTGTGAGAAGGGTGTGGCGTCATGAGTTGGCGGGCGTCTGCGTGGGCTTTGGATCAGGTGCGTGGTATTGGTGCTAATTGCAAGCTGGTTCTTATTGCTTTGTGTGAGTTTGCGAATGATGAGCAGGTGACGTGGCGGTCGATGGGTGAGATAGCTCATAGTTCTGAGTGTGAGGTGCGTACCGTGAAGACTCATTTGAAGTCTTTGGAGGAGTGGGGGCTTATTACTCGCACGCCTCGTTATCGGTGGTGCGATTCTGATGCCCCCTCGTGTGCTAGTCGTGGTGCTCATAAGCACCGGTCGGGTACTGATTATCGGGTGAATATGGAGGTCGGTGACTTTGATGTTTCAAAGCTGGAAGCGCCGATCAGTGAACCTGAATCTGTGGATAAATCTCTTGTGGATAACCCTCCTGTGGAAAACTTGCCTGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCACGCGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2842-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNAU01000018.1 Actinobaculum suis strain DSM 20639, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2841 29 96.6 33 ............................A CATTAGCGCTAGCCACCTCATTCGACGCAATAC 2779 29 96.6 32 ............................G TGTCCCCGAGTCTTTTTCATCCTCGCTGTACT 2718 29 100.0 32 ............................. CGGTTGCGCTGCCTGGTGGTCCTGCACGGCTG 2657 29 96.6 32 ............................G GTCCTGACCCTCACCACTAGCAACCACATCCA 2596 29 100.0 32 ............................. TTTTCCCAGATGATCGTAACGCAACCAGCGGC 2535 29 96.6 32 ............................G AAAACGATGGCCACGCCTTGGCCTGTACATCT 2474 29 96.6 32 ............................G CATTGCCTTCACCCGCTTGCGCTTGTGCTTGC 2413 29 100.0 32 ............................. GCAAAACTATTAAAACCGGTTCCTGGTGAGTG 2352 29 96.6 32 ............................G GAATAGAACTCCCCAAAATCGAAACTTTATAG 2291 29 100.0 32 ............................. CCGCTGACGCGGCTTACCTACCCACCACACAA 2230 29 100.0 32 ............................. AGACAGCGGAATATAGGCTTCGCCTCCAGTCT 2169 29 100.0 32 ............................. AAGACGTCGCCTCATTTCCTATAGATGTGGTG 2108 29 100.0 32 ............................. GACTGGAGTCCTGCGAGATGGTGCGATCTTGG 2047 29 100.0 32 ............................. CATAACCGTGTATGAAGGTCCTTTCCGTGTGC 1986 29 96.6 32 ............................G GGTGGCGGTCGGTCGGTTTGGATGATTTCCAG 1925 29 100.0 32 ............................. GAAACATCCACAAACGAACTAGGCACGAGGCT 1864 29 100.0 32 ............................. CGCCAACCAGGCGGCAGAAAAAGTACCGCCAG 1803 29 100.0 32 ............................. AAACGGAATAGCGCAACCAGACACAATGAAAA 1742 29 100.0 32 ............................. AAACGGAATAGTGCAACCAGACACAATGAAAA 1681 29 100.0 32 ............................. CCACCGTTCGACCTTGCGCGTGGTGGCACCTG 1620 29 100.0 32 ............................. GGATGGAGGCAACGAGTTCATCGGTGTTTTCT 1559 29 96.6 32 ............................G AGATGGATGCCGAAAACCGTGAAAAGGTATTC 1498 29 100.0 32 ............................. CCACCGTTCGACCTTGCGCGTGGTAGCGCCTG 1437 29 100.0 32 ............................. TAAAGACGGTATGAGGATTACGTACGAATCCA 1376 29 100.0 32 ............................. CGCAATAGCTAACGGCAACGATTTTGAACAGG 1315 29 100.0 32 ............................. ATTATTCCGGCCGGGGCTTACTGAGCTACCCT 1254 29 96.6 32 ............................G GTGGCGGCGCAAGAAGAGATTGCGAGTCTGCA 1193 29 100.0 32 ............................. CCGGGTAACCACTGGAGCGGGCGGCCTATCCT 1132 29 96.6 32 ............................A CCTGACACGCGTAGATACGCCCGTGAGAGTGG 1071 29 96.6 32 ............................T CTGGGCTGGTGTAGTGGGGGCAATGAATTTCA 1010 29 100.0 32 ............................. CACAGCGTGCGTTCTTCCATGGTGGTGGGTGC 949 29 96.6 32 ............................G AAACCTGAGCATACCTACAAGCAAAAAACAGG 888 29 100.0 32 ............................. CAGTCCCTATTTACGCGCACGTCCTCGCCACT 827 29 100.0 32 ............................. TTCGCAACACAAGCAAGAAAAGGCAAAACAAT 766 29 100.0 32 ............................. AAGGGGAATGCGGCCGCGGGCGCTGAGGAAAC 705 29 100.0 32 ............................. AAGGGGAATGCGGCCGCGGGCGCTGAGGAAAC 644 29 100.0 32 ............................. GGCATGCGGTCCCATACGGTCGATACGGCGTG 583 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.9 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCCGTGCCCGCAGGTTTGCGGGGTGATCTCACGAAATGGCTGATGGAGATCGCGCCAGGAGTGTTCGTGGGAACTCCCAGCGCGCGGATACGGGAGCAGATCTGGGCACGTACCGTCGCGCTTTGCAAAGACGGCCGGGCAATCATGGTCTGCTCTGCGAATAACGAGCAGGGAATGATATTTCGAACCCATCGGCACGATTGGGACCCTACAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGCTGGGCAGAAGCATCCAACCAGTCAGCGAAGAACTGGTTGGTCGACTGCGAGGCATCAGCGCAAAAAGTATCGATAACTGCTGAACTGTTCGGACGTTCGAACCGGTGACAGCTCGCGCATCGTGGACTGTGTGCGATAGTGATGTGCAGATCGGATCGGGAAACGTTCGTTGAGTAACCTCCAGTTAGGCCGAAATAAGTTAGATGTACAATCGAGGAGCTGGCGGTATACGCACTGGTCAGCAAGT # Right flank : CCCCCCGCCGAATCGATAATTGGGGGGGGGGCGGGTTCTAGGGATTGTTGCAACGCTCGATTCTGAGGAGCGTTATGAATAGGGAAGAACTCGCTGCCAGGCGTGAATGCTATTTCGATCTTGTGGCCTCGGGTATGAATTTCACTGCCGCTGCCCGCGCGGTTGGCGTGTCCAAACGTACTGGTAAGGTCTGGCGGAACGGGCGGACCCGTGCCACCGGGCGTAATGAAGCGCCAAGTGTTGATTGGTACCGTGGCGACATGCCACAACCTGCACCACTACACGCCCGCTATCTAAGCGAGGCTGAGCGCATACAAATCGCTGATCTGCTGCACGCGGGCTACTCCATCCGCAAAATCGCGGTCACGCTGGGCCGCGCCCCATCAACAATCAGCCGCGAACTGCGCCGCAACACAGAATTACTGGCCGCCACCTATCGGCCTTACCGGGCCGATCAACTCACCAAAGCCCGCCAACGCCGTCCCAAACAACCCAAAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //