Array 1 292325-293192 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSU01000002.1 Pasteurella multocida strain NCTC8489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 292325 28 100.0 32 ............................ GAACAACAAAGCAGGATATTGCACACAAATTA 292385 28 100.0 32 ............................ CGAAATGCCCGCAGAATTAAAGGGGTTTAAGA 292445 28 100.0 32 ............................ AAAAAATTTCCTGTTTTTGAGAAAAAACCGTA 292505 28 100.0 32 ............................ AGCATAAACGAATTGACCGTCAAAACCGGCAA 292565 28 100.0 32 ............................ AATCAAGGGTGGTATGTCGGTGATTAACGACA 292625 28 100.0 32 ............................ ATATCACGGGCGTATTCCAACGCATCGCCAAA 292685 28 100.0 32 ............................ ATGCATGTTGATAGTTATTTCTAGCGTATTGG 292745 28 100.0 32 ............................ GTGAATAGAACTAAACGCGTTTTTTCTGCGTT 292805 28 100.0 32 ............................ ATAAAAAAGTTAAGTGAGAACTTGTTAATTTC 292865 28 100.0 32 ............................ CACCATAAATGAATTATATATTTACTTCTATT 292925 28 100.0 32 ............................ TGAACCAAGACTTGGTGGTTAATTATGACAGA 292985 28 100.0 32 ............................ GGCTGGTTTTTCTTCTACTGTTTTCAAATCTA 293045 28 100.0 32 ............................ ACCCAGACTGGATTGATACAGAGACAAAAGAT 293105 28 92.9 32 ..............G.G........... ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 293165 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.3 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTTCATTATAGACTAGATTGTGTAAATCCTCGCCGGTTTTCAAGACCGGTGTATCTAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCTTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1597593-1593603 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSU01000002.1 Pasteurella multocida strain NCTC8489, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1597592 28 100.0 32 ............................ CATCACGTGCGCGAATTTTCATCAGCACTAAC 1597532 28 100.0 32 ............................ TTGAACGTTGTTTTTGTTGCGCGTCTTCTTAA 1597472 28 100.0 32 ............................ AACGGACTTCAGTAGCGCTATTCTTTCTTTAT 1597412 28 100.0 32 ............................ CGGTGTTGTGCTCTTTGCAGACGACCGTGCAA 1597352 28 100.0 32 ............................ TGTATAACCGCCCGTTGCCTTACTTTGTTGCA 1597292 28 100.0 32 ............................ AAAGTCGAAAGCCGTTGTGATTTACGCAACAT 1597232 28 100.0 32 ............................ TGATTTATACACTGCGAACGGCAACAGTAACG 1597172 28 100.0 32 ............................ ATTGTTCAAATTTGCTTGGATCATCTGCTTTC 1597112 28 100.0 32 ............................ TTTAGTGAATTGATGGAATGGCGAGAAAAAGC 1597052 28 100.0 32 ............................ TAAAAAACTCACTGCCGCCGTTGCAAGTTCGG 1596992 28 100.0 32 ............................ AAAGTAAATTTTCAAAACTCAAGTCTTCAATC 1596932 28 100.0 32 ............................ ATTCTGCTAGAATGCCAGCGACCAAATATTCT 1596872 28 100.0 32 ............................ AGTACGCCCGCACTGCTTTGTAGTTGTCGCTT 1596812 28 100.0 32 ............................ ATTCCATCAATTCACTAAACGTCATATCATCA 1596752 28 100.0 32 ............................ AATTCTTATTGCACTCGCTGACAAAGTAATGA 1596692 28 100.0 32 ............................ ATCTTCTTCTTTTACCCATCTGTACTTGTACA 1596632 28 100.0 32 ............................ ATTCAAAAGCATCATTGCAACTAACAAAAAGT 1596572 28 100.0 32 ............................ AGCATCGGAAATGGGCAGAGTTGCAGATGTAT 1596512 28 100.0 32 ............................ AGCTAGAAATAGTCGAAACGGGAATATCAAGC 1596452 28 100.0 32 ............................ GATTGTGCCTTTGTGCTTATGAATGAAGAATG 1596392 28 100.0 32 ............................ TTGTCGGACCGCAAGAGTTGTTCAACAAGGTC 1596332 28 100.0 32 ............................ GTCACAGATTTCAGCGGACAAGGCAAAGTAAG 1596272 28 100.0 32 ............................ CAGTCCCCACGGTCTGCAGCTTCAACTAACTT 1596212 28 100.0 32 ............................ AAGTTAGTCGTATTGTATGGTCTGGAAACGTA 1596152 28 100.0 32 ............................ AGACGAGCAAGAAAAGCAGTTGAAGAAAAAAG 1596092 28 100.0 32 ............................ TAAAAAAACAAAAAGTGCGGTCAATTTTGTTC 1596032 28 100.0 32 ............................ ATGTTTAGCAGTGATTATAAAGTTAGTATTCA 1595972 28 100.0 32 ............................ AACTGACGACTTAATCAAACTCAACAAAGAAC 1595912 28 100.0 32 ............................ TCTCGCACGAGTTCTTCAACACGTATGAGATA 1595852 28 100.0 32 ............................ AAGCCGTGAAATGTTTGATAATGCAAAATGCG 1595792 28 100.0 32 ............................ AATCCATGTTACCTTTTTCATCGTTAAATTGT 1595732 28 100.0 32 ............................ TTATAAATATTCTAGTTCAACTGGTAGATGTT 1595672 28 100.0 32 ............................ CTCAACAACGGCTTTCTTAATCAACTTCCAAA 1595612 28 100.0 32 ............................ TCTCGCACGAGTTCTTCAACACGTGTGAGATA 1595552 28 100.0 32 ............................ ACCAAGAAAGCCACAAAAATGTAATTTTATTT 1595492 28 100.0 33 ............................ TTGAACGTTGTTTTTGTTGCGCGTCTTCTTAAT 1595431 28 100.0 32 ............................ ATATCCAGAAAGTGTTGTTGCTGGACTCTGCT 1595371 28 100.0 32 ............................ TTACGTTTTTAACGTTGAATTTGTTATGCCGA 1595311 28 100.0 32 ............................ TCGAAATACTTATATAAAGAACAATCATCAGG 1595251 28 100.0 32 ............................ ATGATTTGTGCATTAATAGCAGTTACTGCAGA 1595191 28 100.0 32 ............................ ACAACCCGCACAAGTCACGGTGACAATTCTAA 1595131 28 100.0 33 ............................ CACCAAGCGTAGCCATGATGTTAGCTAACCAAC 1595070 28 100.0 32 ............................ TGTCAGACAATTTTTGAGAAAAAACAGCGAGT 1595010 28 100.0 32 ............................ AAGCAAGCAACAACAAACAATCAAAAAAGATT 1594950 28 100.0 32 ............................ AACATAAAACTCATCATGAAATCCGTCCTTGT 1594890 28 100.0 32 ............................ TCAAAAGCAACTGCGAATCCTTTCACTTCACG 1594830 28 100.0 32 ............................ ACTTTGCCGCATTCATCACAATGAACTTCATC 1594770 28 100.0 32 ............................ ATATATTTCTAGATTAAGAAGTGCGGTCATTT 1594710 28 100.0 32 ............................ GTAGTGCGTCAGCTTGTCGGTGTGCTAGTGAC 1594650 28 100.0 33 ............................ ATTCACAATTCGCACAATCTTTGTCGCTATCAT 1594589 28 100.0 32 ............................ ATTGCCCATTCGCGAGGAAAAACAAGGATCAT 1594529 28 100.0 32 ............................ AAATGCTTTAATCCAAAAAATTACATCATCAA 1594469 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 1594409 28 100.0 32 ............................ TTAATCGTTGCCATATCTCACTCACTCAACAA 1594349 28 100.0 32 ............................ AGTTGGTAGTATTGTTGCTTTCCGTAAAGGTA 1594289 28 100.0 32 ............................ GTTCATTGAGACTTTCGCTGTCCATTTTTTCA 1594229 28 100.0 32 ............................ AGACTAGCGTGCGAAATAGCCCCATTCTAGCG 1594169 28 100.0 32 ............................ TATATCGCCCGATGATTCGTCTTGCAGGTGAG 1594109 28 100.0 32 ............................ CTCACCGTCATCAGGAATGTGTTCGTTAATGA 1594049 28 100.0 32 ............................ AAGAAAATAAAAACAATGAAACTGCGTGACTA 1593989 28 100.0 32 ............................ GGAGCGAACACAGGTCGCCGGTGGTTCAGTAA 1593929 28 100.0 32 ............................ ATTCACTCAACTTGTGGATTCTATGGTTGGGT 1593869 28 100.0 32 ............................ GATGCGATTGATTCAAATAACGCATCTTTCAA 1593809 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1593749 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1593689 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1593629 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCGGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAAACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //