Array 1 559-200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000030.1 Campylobacter fetus strain 2016D-0238 NODE_39_length_4971_cov_17.904373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 558 30 100.0 36 .............................. CCATCGCTAAACGCCCCACCCGCGGTAGTTAGGTGA 492 30 100.0 35 .............................. ATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 427 30 100.0 36 .............................. AGCAGATAGCGCAGTAGATAAATTTAAAAATAGCTT 361 30 100.0 36 .............................. CAGTGATGATACTGTATATACCCTTATAACAAATGG 295 30 100.0 36 .............................. ATTTATATTTGCTGATTGCCAAAGAGTAAGATACGT 229 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACTTATAGAAATATTGGAGATAAAATGACAATTAAAATGTTTCAACACAAATATTGTCATTAGCAAACTTTACTTTCTCTCCAAACTCTTTTAACTTATCACTAGTTTCAACACAAATATTGTCATTAGCAAACAAAGATTTACACAATCTTAATTGTGTCCTTGATGAGTTTCAACACAAATATTGTCATTAGCAAACAAAGATTTACACAATCTTAATTGTGTCCTTGATGAGTTTCAACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATATTGTCATTAGCAAACTAATTACAATCTAGTAAAAAGCGTAGAAATTGTGTT # Right flank : CCATAATAAACTCATCATCTAATTAAATTTAAAAAGAAATTTAATTAGAAATTGAAATAAGAAATAAATTTAAAAAACTATTTAAAACTATTGAAAATGGATTATTTGTTTTATATATAATATAGCTATAAATAATAAAAATAAATTTATTTTCCAATCTAAATTTAAAAAATAACAATAATAAGTTAAATATCATAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 760-986 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000030.1 Campylobacter fetus strain 2016D-0238 NODE_39_length_4971_cov_17.904373, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 760 30 100.0 35 .............................. TCATCAAGGACACAATTAAGATTGTGTAAATCTTT 825 30 100.0 36 .............................. TAGTGATAAGTTAAAAGAGTTTGGAGAGAAAGTAAA 891 30 100.0 36 .............................. ATTTTAATTGTCATTTTATCTCCAATATTTCTATAA 957 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ATAAATGTTTGCTAATGACAATATTTGTGTTGAAACCCATTTGTTATAAGGGTATATACAGTATCATCACTGGTTTGCTAATGACAATATTTGTGTTGAAACAAGCTATTTTTAAATTTATCTACTGCGCTATCTGCTGTTTGCTAATGACAATATTTGTGTTGAAACATGATAACACTACTAAACCAGAAAAGCCAACTGATGTTTGCTAATGACAATATTTGTGTTGAAACTCACCTAACTACCGCGGGTGGGGCGTTTAGCGATGGGTTTGCTAATGACAATATTTGTGTTGAAACAACACAATTTCTACGCTTTTTACTAGATTGTAATTAGTTTGCTAATGACAATATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTGAAACTCATCAAGGACACAATTAAGATTGTGTAAATCTTT # Right flank : CTTTATAGAGTTAAAGATGATGTCATTCATAGCTAAGTTTGCTAATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTGTTGAAACCTAAAATTTACGATATCTATATCAGGGGTTTTATCGTTTGCTAATGACAATATTTGTGTTGAAACTTTATAGAGTTAAAGATGATGTCATTCATAGCTAAGTTTGCTAATGACAATATTTGTGTTGAAACCTAAAATTTACGATATCTATATCAGGGGTTTTATCGTTTGCTAATGACAATATTTGTGTTGAAACATTCTTGTGTTGCTAAACCAGACTCCACTTACTCTGTTTGCTAATGACAATATTTGTGTTGAAACTGAAATGGTATATAAGCATCAGGAGAGAGTTTGCTGTTTGCTAATGACAATATTTGTGTTGAAACTTGTCGAATGCCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1471-1181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000030.1 Campylobacter fetus strain 2016D-0238 NODE_39_length_4971_cov_17.904373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1470 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 1405 30 100.0 35 .............................. AGAGTAAGTGGAGTCTGGTTTAGCAACACAAGAAT 1340 30 100.0 35 .............................. GATAAAACCCCTGATATAGATATCGTAAATTTTAG 1275 30 100.0 35 .............................. TTAGCTATGAATGACATCATCTTTAACTCTATAAA 1210 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 5 30 100.0 35 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : GATAAAACCCCTGATATAGATATCGTAAATTTTAGGTTTCAACACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTAGCAAACTTAGCTATGAATGACATCATCTTTAACTCTATAAAGTTTCAACACAAATATTGTCATTAGCAAACTTATAGAAATATTGGAGATAAAATGACAATTAAAATGTTTCAACACAAATATTGTCATTAGCAAACTTTACTTTCTCTCCAAACTCTTTTAACTTATCACTAGTTTCAACACAAATATTGTCATTAGCAAACAAAGATTTACACAATCTTAATTGTGTCCTTGATGAGTTTCAACACAAATATTGTCATTAGCAAACAAAGATTTACACAATCTTAATTGTGTCCTTGATGAGTTTCAACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1932-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000061.1 Campylobacter fetus strain 2016D-0238 NODE_51_length_1977_cov_18.608421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1931 30 96.7 35 ...............G.............. AATATGAGGCAAGAAAAACAAAAGGAGGTTAGATA 1866 30 96.7 36 ...............G.............. TAAAAAAGCATAGCTAGGGCGTCTAACTCATCCGGG 1800 30 96.7 35 ...............G.............. TGGGAAGAAAGAGAGTATTATTCTTCTCGTATAAG 1735 30 96.7 35 ...............G.............. AGCTGACTTGATAGCTAGTCGTATTAAAAAAAGAG 1670 30 96.7 34 ...............G.............. TAGATTGATATTTGACGGGAAAAATCTAAGCACA 1606 30 96.7 35 ...............G.............. TCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 1541 30 96.7 36 ...............G.............. TAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 1475 30 96.7 35 ...............G.............. TAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 1410 30 96.7 36 ...............G.............. AGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 1344 30 96.7 35 ...............G.............. ATTTGAACTACAGGTACATTTATAACATCAAATAA 1279 30 96.7 37 ...............G.............. ACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 1212 30 96.7 36 ...............G.............. TTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 1146 30 100.0 36 .............................. AATTGATATATGCAAATATATCTCTATTGTAAAGCC 1080 30 100.0 35 .............................. GGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 1015 30 100.0 37 .............................. TTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 948 30 100.0 36 .............................. CCCCTATTAAATATAACCACCAATGAACCGTCAATG 882 30 100.0 36 .............................. ATATCTTTTACATTTTTACCATCTGTTGCTAAAATA 816 30 100.0 34 .............................. TTAAATGAGGCACTTGCAGTAGATAAAACTACTT 752 30 100.0 36 .............................. GCTTTTAGCTTAGCTATCTCCACTCTATCGCTTTCT 686 30 100.0 36 .............................. TTAAATTCTTGAACTTTGTTCGCTTGATTTATATCT 620 30 100.0 35 .............................. TTTTTTATACTATTTATAGAAGCTTTTTGAGCATA 555 30 100.0 36 .............................. AAGTTCATTCGAGCGATATTAGAGCTCCGCTTCCAA 489 30 100.0 36 .............................. ACATACTGCAGAGCTTTTTCCAGGTCTTGCACACCA 423 30 100.0 36 .............................. AGGCTATGCGTAAAAACTTCTACTGGGTAAAAAATG 357 30 100.0 36 .............................. CTGATATCTGTTTTTACGGTTTTTTTAAATTCATCT 291 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 225 30 100.0 36 .............................. CGTTCAGCTTCCATTGACAAACCACCTTTTAAAATA 159 30 100.0 36 .............................. TTTCTTGCGAGATCATTTACGTGGCATGGGCTTATA 93 30 100.0 36 .............................. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 98.2 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : A # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 14035-13338 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000027.1 Campylobacter fetus strain 2016D-0238 NODE_27_length_15450_cov_22.604501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 14034 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 13968 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 13902 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 13836 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 13770 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 13703 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 13637 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 13571 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 13500 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 13435 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 13367 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 11 30 96.1 37 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TACGTTTGCTAATGACAATATTTGTGTTGAAACGAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCTGTTTGCTAATGACAAGATTTGTGTTGAAACACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGGGTTTGCTAATGACAATATTTGTGTTGAAATTTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAAGTTTGCTAATGACAATATTTGTGTTGAAACATAATTATTGAAGAATATTTTTGTTTTAGACTTCTGTTTGCTAATGACAATATTTGTGTTGAAACTTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATTGTTTGCTAATGACAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 15252-14239 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000027.1 Campylobacter fetus strain 2016D-0238 NODE_27_length_15450_cov_22.604501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15251 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 15186 30 100.0 35 .............................. TTAAAATACCTTGACAAGTCTAAAATTTTATACTA 15121 30 96.7 36 .............................T TTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 15055 30 100.0 37 .............................. TTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 14988 30 100.0 35 .............................. TTTTTTCTTGCTGTGCGTTTAAAGCCTCTTGCTGT 14923 30 100.0 37 .............................. TGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 14856 30 100.0 36 .............................. AGTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 14790 30 100.0 35 .............................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 14725 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 14660 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 14596 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 14531 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 14465 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 14399 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 14333 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 14268 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TTTTATGATATTTAACTTATTATTGTTATTTTTTAAATTTAGATTGGAAAATAAATTTATTTTTATTATTTATAGCTTTATTATATATAAAACAAATAATCCATTTTCAATAGTTTTAAATAGTTTTTTAAATTTATTTCTTATTTTAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATTGTTTGCTAATGACAATATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCCGTTTGCTAATGACAAGATTTGTGTTGAAACAAGATTTCTATTAATAATCAAATTTTAGAGGAACAAGTTTGCTAATGACAATATTTGTGTTGAAACGGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGGGTTTGCTAATGACAATATTTGTGTTGAAACCTTTGATGATAACTTTTTGGCTCTTTTGTGTGATATGTTTGCTAATGACAATATTTGTGTTGAAACTCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCCGTTTGCTAATGACAAGATTTGTGTTGAAACTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 1414-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AACKTY020000018.1 Campylobacter fetus strain 2016D-0238 NODE_52_length_1460_cov_25.291396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1413 30 100.0 35 .............................. TTGTACACAGGGTATGTAAGATCTGTTGTAATCTC 1348 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 1282 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 1217 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 1151 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 1085 30 96.7 37 ...............G.............. TAGACCTATATTTCGTAAATTTATAAAAGATATGGTT 1018 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 952 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 886 30 100.0 36 .............................. TATTTAGGGAGAATAACATCATTTGCCGGATTTACT 820 30 100.0 36 .............................. ACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 754 30 100.0 36 .............................. AAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 688 30 100.0 36 .............................. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 622 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 556 30 100.0 36 .............................. ACTTTATATATACAAGTTACTTTAGCAGTAGAAACA 490 30 100.0 35 .............................. TGCTAAGGCTAAGCGTATAATGGACGCGCTAAGTG 425 30 100.0 36 .............................. TTTAATAGTGCTCTTAAAACTGGCTTTTTATTATTT 359 30 96.7 36 ...............G.............. TTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCCA 293 30 100.0 36 .............................. TGTTCTGTTTTTGCGGTGCGGTTAAAGTCCATTATA 227 30 96.7 35 ....A......................... TCCGGATTTAGCAAGGAAGCTTTAGCTCTAGCTTC 162 30 100.0 36 .............................. AACGAAAAAGAAGGAAGTTGGGCTGAGGGCATAAAA 96 30 96.7 36 ...............G.............. AGGTGCATTCATCGTCGTTTAGTTTCACTATCTCTA 30 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 98.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TGTGTTGAAACTTTAAATTGTCATAGTGCTTGTATAGTTCCCAGCC # Right flank : C # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //