Array 1 36826-34397 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGT01000001.1 Moraxella catarrhalis strain COPD_M103 NODE_1_length_321335_cov_47.2274, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36825 28 100.0 33 ............................ CATGAGCCTTTAGATGATGATGATGACTTTGTC 36764 28 100.0 33 ............................ GATCAGATTTATCCTTCACGACCGCACAGGTCG 36703 28 100.0 32 ............................ AAATCATCTTCTAAATAAAGATCAGATTTATC 36643 28 100.0 32 ............................ TGTGAGTTGACAAATCTTTGCCAATTTTATTA 36583 28 100.0 32 ............................ ATGATTATAAATCACTATCGCAGGTTTATTAT 36523 28 100.0 32 ............................ ACACAAATACTTTTGTAGTGAGTGGTGCTTTG 36463 28 100.0 33 ............................ GAAAAAACTCTTTAATCAAGCGTTTTTTGGCGG 36402 28 100.0 32 ............................ TAAAAAAGGCGGTATTTTATGCTCGTCGTGCT 36342 28 100.0 32 ............................ CAAACAAAACGGTAACAACTCGGTAATCTCAA 36282 28 100.0 32 ............................ TTTGGCATGAGCATCTGAGAAATACCGCCTAC 36222 28 100.0 32 ............................ AGCCGCCCGCACACACACAAAACGCATATAAG 36162 28 100.0 32 ............................ TTTGGCTAAAATGTACCCACATTTAGGCATTC 36102 28 100.0 32 ............................ GTGGGGTCATACGCCCCAAAAATGATGGCCAC 36042 28 100.0 32 ............................ ACAAAGTCAAACACCCACGCTTTACTCACCGC 35982 28 100.0 32 ............................ AGCTTGCCACCGCTCAAAACGAGCTAAGCACC 35922 28 100.0 32 ............................ TGACGAATCTAGCCGTATTCAGTATTTAGCAT 35862 28 100.0 33 ............................ TACTAGATGGTGCTAGAACTGAAGAACAATTCT 35801 28 96.4 32 ........T................... ATGAATATTGCAAATTCACAGATTTTTGATAT 35741 28 100.0 32 ............................ GGATGGGGTGCTATTTATGCATAGAAAAGTTT 35681 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 35621 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 35561 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 35501 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 35441 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 35381 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 35321 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 35261 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 35201 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 35146 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 35086 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 35026 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 34966 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 34904 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 34844 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 34784 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 34724 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 34664 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 34604 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 34544 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 34484 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 34424 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //