Array 1 262586-263819 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 262586 30 100.0 37 .............................. ATTTGTTCTGGGTATGTTTGCTTCATCAAGCTTAATG 262653 30 100.0 36 .............................. ATAAGTCCACAGGCTTTTACTGTTAGAAAATACAAG 262719 30 100.0 35 .............................. AGTTCAATATTAGTTAAAACGTCTTTTCTGTTTAA 262784 30 100.0 37 .............................. GCATATATCTATTACCTAAAACCAGCTGTGCTTCATC 262851 30 100.0 36 .............................. AATATTTTATTTAACGCACTTACCAGCCATTCAAAC 262917 30 100.0 37 .............................. CCTCGTTAGACGTTTCTGCACTGTCTAAAACTTCTTG 262984 30 100.0 36 .............................. GATCCTAACTGGCAGCAAATTAAAAGGGAAAATGCG 263050 30 100.0 36 .............................. TTACAATGTCTTCAATCTGCTTTTTGAGTTCCTGAG 263116 30 100.0 36 .............................. ACGTATGTACAAAGATATATACCAAACTCTTAAAAA 263182 30 100.0 36 .............................. CAAAAAAATCAGTCGTTAATTTCATTTTCTCCCCAT 263248 30 100.0 36 .............................. AATTCATGTTGTGGTTCAGTTGTTGCAATAATACCA 263314 30 100.0 38 .............................. ACTTCTTCGCCTTTTCGTGCCTTTACACCTTCAAAAGG 263382 30 100.0 36 .............................. TATCCCAGCGACAGGATAAATCCTCCTGATGTTGAC 263448 30 100.0 38 .............................. TCTTCATCAATCGCATCAAAATTACGCTCAAGCACCCT 263516 30 100.0 38 .............................. TAGTAATGGCAAGATATATGCCATCAGTGGGTGGGATG 263584 30 100.0 38 .............................. ATTATTTGCATTTTCAACCTCTCCTTTCTCTTCAATAT 263652 30 100.0 40 .............................. CCTTATTATTTTTATTTGTTACATTTGTTAAATTTTTGTG 263722 30 93.3 38 T.....T....................... TAAGTTTTTTTCACTTCTCCAAGTAACCCTGCTAAAGG 263790 30 90.0 0 T...............C............A | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 99.1 37 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TGAAATCTCAACTCCATTATAAAACCCGGCTTTTATGTGATTATGATAATTTAATTATACCACTCTTTGCTTAAAGCAACAAAATTACAATTCAGCCTAAAAAGTTTGTGATATTTTAGAGAGTAGCTGATATTTTAAACTTCATTTTTTATATAATATTTTTCTTTCTTGCTTTTTTTGTGCATCCAGACTGTGCAGCCATGCAATTTATAAACATGCATTTTGATAGGGCAATTCAGATATAAATATGCATTTTGACCAAAAGTCGTTTCCGTCGATCTCACATGCAAAAATTTTCGGGTTTGATTTGTATTCGGTTTCGTTAAGATTTTGCCAAGCTTTATCTGTTTTGCTGGTAATCTGCTGGTCGACAGAAGGCTATAACTGGATTCTCTTGATTGACACTGCTGAGTTTTTTCAGTTTTTCTACAGATGTATCGATAAAAAAACATTGACATGGCTGAATAAAGTTGATATAATAAAATCAAGCTTTTCAACCG # Right flank : ATTTCAGAACTTTTAAAGCCGAGTAACAAAAATCAAATTGTACAGGGTGGAAAGATGGACCAAAGCCTTTTTAAAGTTGTCGAAAAGTTTGTAAGCATTGAAGGTGAAGGGATCAGAAGTGGCTATCCTGCAATCTTTTTCAGATTTGCTGGATGCAACTTGAGCTGTTCATTTTGTGACACAAAATATGCAACACATAACCCCGTGTATGAAGAGATGACAGCTCAGCAAATAGTAGAGTATGCAAAATCAACAGGGTTTAGCAAAGTAACCTTAACAGGTGGAGAGCCACTGATACAGCCAGATATCCACTGTCTTATAGATATATTAATCAAAGAGGGGTTTGAAGTTAACATTGAAACAAATGGATCTGTTGACATAAGAGGTGTTAACAGAAATGCCATTATAACAATGGACTATAAATGTCCGTCAAGTGGTATGGAAGACAGAATGCTACCTGAAAATATAAAGCTGCTTGGAAAACAGGATGTTTTGAAGTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 277964-278591 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 277964 29 100.0 37 ............................. GCGGCGACCCTTGACACCTGCACGCCACGTGGCTATT 278030 29 100.0 37 ............................. AAATTAGAATCATCTTGATTTTCAAAGATTGTAAACT 278096 29 100.0 37 ............................. AAAGAAAAAAGATTACCCGATACATTTATATTCTCAG 278162 29 100.0 38 ............................. ACGTGTAGCAGACAACTCTAAAGAATCCAAAACCCACG 278229 29 100.0 39 ............................. AGTAATTCTTACAAGAGATAAAGACATTAACGTTCCATG 278297 29 100.0 38 ............................. CTAAATAATCAAGCACCTCATACTCAAGAAAATCGCTA 278364 29 100.0 37 ............................. AAAGAAAAAAGATTACCCGATACATTTATATTCTCAG 278430 29 100.0 36 ............................. ATTTTTTCATCATAATCGTTATCGAATGCTACATAG 278495 29 100.0 39 ............................. TATACCAAAACAGTCTCTGCATATTTTTTGCCGTTTTCG 278563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 100.0 38 TTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : AAAAAAAATTCAAAAAATATGCGATGTTGAAATGTTACTGAAAATAATCTTGCCTTATACTTTCACTCTTCAAGCACAACCAGGCTTAAAATTTAAACTTTTTCTAAAACTGCAGATAAAAACATCCGCAAGGAGCAAACTTGATAACCAAAACATGTGACTTTCCCCCTACAACTCAAAAGACATCACCCTGCAGGCAAACTGTAAAATGTATCCTGAGAAAATATGCAAATAAGCAGTGAAAAGTTTGCATTTTGACTAAAAGTCGTTTCCGTCGATGTCCGGTGCAAAATTTTGCAGTATAATTTGTATTCGGTTTCATTAATATTTTGATTGGCTTTGTCTGCTCTTCTGGTAATCTGCTGGTCGACAGAAAACTCTGACTGGCTTCTTTTAATTGACACTGCTGAGTTTCTTGAGGTTTTCTACAGATGTATCGATAAAAAAACATTGACATAGCTGAATAAAGTTGATATAATAAAATCAAGCTTTTTAACCGT # Right flank : CGTTACTAAGGGTGATAGCTTTTGTAATACTCTTCTTATTTTTATTGTAACAATTATAGTTTTGTTTTCTGCCTGATTGCATATCTCTTTTCGATGTGTTACAATTTATTGTTAGAAATAGTTTGTATTATAAAGGTGAATAGTATGATAATTAGAAAAATAGTGAATGGTTACCAACTTGAAAAAATAGTAGAAATCCCTGAATCAGCAAAAAATGTACCTGTTGAAGTGATAGTAAGAATACCTTTTAACAAAAGAAAAAAAAGTAAAAAAAGTGATGATATTATAGACGAACTATCCGGGGTATTTGCTAAATATAAAAATCCAATTTTTATTCCCAGAGAAGAAGAAGAAGCCTGGAAGAACAATGTGAGGGAAATTTATGAAAAAGAACAAGAAGAGAATTCTAAAACTAATTGATGCCAATGTGATTCTTCGTCTTTTACTAAATGATATTGCTGAACTTAATCAAGTTACCAGGGATATTATTAAAAACAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 280318-280889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 280318 31 100.0 36 ............................... TAGTATCGTAATACTTAAAGTATCTTTTGCTTAAAA 280385 31 100.0 35 ............................... TTATATAATTTACAATTTGGTTTGGATGGTAATAA 280451 31 100.0 37 ............................... TTCTGCCAATCTTCAAGGTCTTCTTCCTTAAACTCTT 280519 31 100.0 38 ............................... GCGATAGGGCAAGCAGTTAAAAATGCAATTAGCACAAG 280588 31 96.8 37 ..............................T TCCAGCGAGTGGTGTTTTGGATGGGGATAAGTTGAAA 280656 31 100.0 38 ............................... CTTGTAAATGTTTTGCGATTATAAGCAAGCGATTCAAG 280725 31 100.0 37 ............................... TCAAACACAACTTTCACCATTGGATCATAACTTAAAA 280793 31 93.5 35 T...........C.................. TGCCAAACCCACCACATTTCCACTTCGTCGTCATA 280859 31 93.5 0 C.............................A | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 98.2 37 GGTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TAGACTTTTTCTCTGAAAAGTATCTTTTCACAGCATCACAGTTTATTGCTTCTGTTCATTCATACATATTAAGAATTTTTAAGCAAAACCTGTATGTCAAAAACTTTTTTGCTCTTTATATTTGTGATTATAATGTTAAACTTCCAAACTATTTTTTCCTATCTTCTTTAAGCCTGAACCACAAATACCTGTATCAAAATAATTGTTGCATAAATATGCTACAGAATCATCAATTGTTCAAATATATATTTATTTTGACTAAAAGTCATTTCCGTCGATGTCCGGTGCAAAAATTTTGCAGTATAATTTGTATTCGATTTCATTAAGATTTTGATTGGCTTTGTTTGTGCTACTGGTAAATCGCTGGTCGACGGAAGGCTTTGACTGGCTTATTTTTATTGACACTGCTGTGTTTTTTGAGGTTTTCTACAGATGTATCGATAAAAAAACATTGACATGGTTGCATAAAGTTGATATAATAAAATCAAGCTTTTTAACCA # Right flank : AAGGTTGCTGCCACAGCCAAAAGGCTGTGGTTTTGTTTTTGCCAGAGTGGTATAATTAATAGTGTAAAGTCAAAACTGAAAACTTTTTGTATAACATAAGTTTGTAATAAAAAAGGAGAAAACCATATGCAAAATAGCCTTCCTCCACATGAACATGATTCAACCTTTAAGTTTTTGTTTGAAAACCCCAGAGATATACTTTTTCTTATCAAAGATGTTATAGGCTACAGCTGGGCAAAAGACATCCAGGAAGATTCAATTGAGCTTGCGGACAAAGAGCTTGTTGGTGAAGATTTTCTTCAAAGAAGAGCAGATGTTGTAGCAAAAGCAAAGCTGAAAGACAGGGAAGTATACTTTTACATTATCATTGAGAACCAGTCAACAGTTGCAAAAGACATGCCAGAAAGACTTCTGCGATACATGATACTACTGTGGGCAAAGAAGATAAGAGAAGGAGCAGAGAAGCTTCCTGCGATTATTCCTATTGTGACATACAACGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 284083-284642 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 284083 30 100.0 35 .............................. GTCGTGGTACCTTAAAAAAACAGTGTATGCAATAA 284148 30 96.7 37 T............................. GATATGGGATCAATGTTTTCCCTACTCGTTCTCCATA 284215 30 100.0 36 .............................. TTACAAGCAGTCCAGCAAACCTTAACAAAAATTAAG 284281 30 100.0 38 .............................. ACTCCACCGCCTCTACAATGAAATACCTTTTAATTCTT 284349 30 100.0 36 .............................. GCCTATGATGTCTATCGCTGTTAATCCGTTAATATG 284415 30 96.7 35 ...........T.................. TCTTTAAATACAACGCTTATAACACAGTTCGGGAA 284480 30 100.0 35 .............................. TGATTTACATCTGTCATCCAGCCTCTTCCTGCGTA 284545 30 100.0 38 .............................. CGTGAGGCATCCAATGTGCCCCATTTTCCGTCATCTTC 284613 30 90.0 0 ...........................GCT | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : AACATCTTAGCACGTATTTTAATACGTGTCAATATTCTAATTGATCTGTTAAGATATAATTGTTTTTATTTCTATCTTAGCATAAATTAAATAAAGGTAGAAGTTATCAGACTTTCATTTTTCTGCTGGAAGTTTTAAAAAAGAACTACAAGTAAAATGTGTAAGTCTGCGCCATACATTTCAAGACTTTTTTAGACTCAGTCATATAAACATTTTCTGAGAAAATATACAAAGAAAGAATAGATAATTTGCATTTTGACCAAAAGTCATATCTGTCGATGTCAGGTGCAAAAATTTTGGAGCTTTATTTGTATTCGATTTCATTATGATTTTGATTGGCTTTGTTTGTGCTACTGGTAAATCGCTGGTCGACGGAAGGCTTTGACTGGCTTATTTTTATTTATACTGCTGAGCTTATTGGTATTTTCAACATATGTATCGATAAAAAAACATTGACATGGTTGCATAAAGTTGATATAATAAAATCAAGCTTTTTAACC # Right flank : TACTTTTTTTATTTTGCCCCTCTTTTTTTGCCTTTTCAGAACTTCGCATAAAATTTGACCTTTCTTTTATTTTTCAAACAGATAAAATTGATATTGTAAAATTTAAAACTCTGGCAATCGAAAGAAGGCTTAAAAAACGTGGAAAATTTTTTTGATGTCAAAGGTTCAACCATTCAGGCGTATATTGTATGCAAAAGGCAGGCATGGCTTCTGTCACGAAACATCAGCCCTGCCGGTGACAACCCTTTTCTGGAGATAGGCAAGTTAATATCGCAGGAGTATTATAAGCATGACAAAAAAGAGGTGTTCTTTGACGGTGTTGTTCTGGACCTGATCCGCAACGAGAATGAGGTTTTGCTGGTTGGAGAAATAAAAAAGTCTTCAAAGTCAAAAAATGCTGCAATGACACAGCTCAAATTTTACCTCTACAAGCTTTTCAAAAGCAACATAAATGCCCGTGGAAAGCTTTTGATACCAGAAGAGAAGAAGACTTTTGATGT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 5 300135-301297 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 300135 30 100.0 37 .............................. TTCTATCCAATGTTACTTTGATTAGTGCCATCTTCAA 300202 30 100.0 38 .............................. ACTGTGTAAGGCTGGATATAGTCACCAAACTGTGAGAT 300270 30 100.0 36 .............................. ACGTTTCAAAAACCGCACGTTTGAAACTTTTAATCC 300336 30 100.0 37 .............................. CACCATACAGGTGTAAGCCCTTCACAGCGTCCGCAAA 300403 30 100.0 36 .............................. GGCTTTACTTTTGCAGGGTTTATACTCGCTAACCAC 300469 30 100.0 37 .............................. TCGATCAGACGAGTAATCCTTCTCTGTAAACATCTTA 300536 30 100.0 37 .............................. TGCGTTAGTCCTTCTGGTTCAATAACAACGACGATTC 300603 30 100.0 38 .............................. CGCCGACCTTTGTCCTCTACCTGTATTAAATCACCTGT 300671 30 100.0 37 .............................. ACAAATTTTGTTTTTGCTTGTTGCGGTTGGGCTGATA 300738 30 100.0 36 .............................. TGTTTTCAGCTATATCATAATTAATGATAAGTGAGC 300804 30 100.0 36 .............................. GCAAAACTTTTGAATGTAACTGATGCAACAGTAAAT 300870 30 100.0 34 .............................. CTAAATTTCTCAAATAATACAAACAACTCTATAC 300934 30 100.0 37 .............................. CACAGATACGCTGTCCAATCTGTATCATTCTGCATTA 301001 30 100.0 39 .............................. GCTGATAAACCTGCTGTCTCAAGGGCCTTTTCAACGCTG 301070 30 100.0 36 .............................. TTTGTAAAATGAATTCTGTATGTTCCTTTTTTTAGT 301136 30 100.0 36 .............................. TTCTGTTATTATTTTAATTAGTCCTTCCTGAACAGC 301202 30 93.3 36 ..........................G.G. GTCACATATGGAATTGGTACGTCGCCAACATTTTGT 301268 30 93.3 0 ..........................G.G. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.3 37 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : TACAAAATTGTGCAGTTTAACAAACAAGATACACTCCCTTGAGAATTCAGTAAATCTTTTTAGCATTTACTATTTATAAATCAGAATGATCAGTTTTTGAAGAGCAAAAATTTTGCGAAGTTGATCACTAACCTGTGAATTTTTGGATTTTTCAAGTCTCCGGGTTGATAATTTAAATTAATTTTCTGCAGGTTCTGACATTTGACTTTAACGGCATGAATATTTTTAAATTGTTAAAGGATAATTAATTCATTTTGACTAAAAGTCATATCCGTCGATGTCCGGTGCAAAAATTTTGGAGCTTTATTTGTATTCGGTTTCATTAAGATTTTGATTGGCTTTTTTTGTGCTACTGGTAAATTGCTGGTCGACGGAAGGTTCTGACTGGCTTTTAATTGTTGATAGTGCTGAGTTTCTGCGAGTTTTTCATAGATGTATCGATAAAAAAACATTGACATGGCTGAATAAAGTTGATATAATAAAATCAAGCTTTTTTACCG # Right flank : CAGCCTGGTGCCACAGCCAAAAGGCTGTGGTTTTGTTTTTTGCAAAAAAGGATCAGAAAAGCTTCCTGCAATTATTCCTATTGTTACATACAATGGGTTTGAAAAAGAATGGAATAAATATTTTTGATATGGGCGGGCAATGTAATAAGACCAAGGCTTACAAAGGAAGACAAAGAAGAGTTTGACAGGCTGGTAGAGAGAGTAAAACAAGGGGGTGCAGGCAAGATGGGTGAGTTTGTGTCAAATGTTTCAAGGCTTCTTGATGAAGTACAAATGAAAAAATTTAACGAAGGGAAAATTGAAGGAAAAGAAGAGGTAGCAAGGAAACTGATAAATAGAGGATTTAGCGATGAAGATATTGCAGAGCTTACAGATTTTGATATAGAAAGAATAAAAAAGCTTAGAAAAGAGTTGATAAATTAAAACATCAAAGCGTCATCAAAAGATTACGTTTTTAAGCAGGCAGGGCTATAGGCTTTGTCTGTTTGTTTTTTTAATTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 6 306295-307326 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 306295 30 100.0 37 .............................. GCAATATTTTTAATATTTTTCAAAGTGGGTGCATATG 306362 30 100.0 37 .............................. AAGTCTTGTGTGAAAATGTCTGACAAACTCCCAACTG 306429 30 100.0 38 .............................. ATTTGACGGGTCTAGCTGTGACAAAGCATATGCACCAG 306497 30 100.0 35 .............................. ACGTGAACTCCGGGTAAACCTACTATGTCTTCTCC 306562 30 100.0 36 .............................. TCCTCTGCTATCACATCAAAGCTTGTCCAGATCTCT 306628 30 100.0 36 .............................. CCTAACAATTCTGCAATGCCAAAATAACTGCTTTCT 306694 30 100.0 37 .............................. CGAAATAGTGAGATGTTAAAGTGCTTTTAGCGTGTCG 306761 30 100.0 38 .............................. GCTTGCAATTCGTAGTGGTGCTTACAAAACTATTCACG 306829 30 100.0 36 .............................. CTGCGTTGCTTTATCGTTTCCGCCGGCATAAAACAT 306895 30 100.0 37 .............................. AAAAGCGTTTTGAAGACATCTTAGGCACAAAGGCAAA 306962 30 100.0 36 .............................. GTTTATTGTTCTTCCACAAATTTTGCATTTTTTATT 307028 30 100.0 38 .............................. TTTTCTTTTTCATTTCTCCACCTCCAAACTGTATCATA 307096 30 100.0 38 .............................. AAATATACAACTTTTTTAGGTAATTCCGATTTTTTATT 307164 30 100.0 38 .............................. TTCTGAAATTCAGGCACGCAAATATACTTCAACTTATA 307232 30 100.0 35 .............................. GGGGCTTGAGCAGCAAGTTTAAATGTTCTGTAAGC 307297 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 37 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : AAGGCCGTTGTATAAAGAAAAAAGATACATTAAAAATATCACAATAACAGCACCTGTTATTATCAAAACCTGACTCCTTTTCTTCATTTGATTTCACCTCTTATTTTTTATTTTCTTGCAACAATTTAATATATACCCTGTTTTGATGCAAATTACAACAGCAAAGTTCCAAATATTATAACGGAAAAGCTGGTATTTTGTTTTGAAATGTCTTTGTTAATAAACATTCTTTTTGCTTTGCAAAGATATACTGTTTGACCAAAAGTCATTTCCGTCGATGTCCGGTGCAAAAATTTTGGAGCTTGATTTGTATTCGGTTCCATTAAGTCCTAGCTTGATTTTTTGCACGTTGCTGGTAATTTGCTGGTCGACGGAAGGTTCTGACTGGCTTTTAATTGTTGATAGTGCTGAGTTTCTGCAAGTTTTCCATAGATGTATCGATAAAAAAACATTGACATGGCTGAATAAAGTTGATATAATAAAATCAAGCTTTTTTACCG # Right flank : CGCCCCATCCAGTCTCGGGGCAAACGTAGCCATCCAGTTTATAGCCTTACATAAAATTGAATTGGAAAAGAATGGAATAAATATTTTTGATATGGGCGGGCAATGTAATAAAGCCAAGGCTTACAAAGGAAGACAAAGAAGAGTTTGACAGGCTGATAGAGAAAGTAAAACAAGCAGGTACAGGCAAGATGGGTAAGTATATGTCAAACATCTCAAGGCTTCTTGATGAAGTGCAAATGAAAAAATTCAATGAGGGAAAATTAGAAGGAAAATAATGCACAATATTCGTGAGAAGCATCCTGTTATCTTTTATTGAACAATCTCTTTTTTCATTTTCTTCAGCTCTTCCAACTTGTTTTCCATTTCTTTAGCAGTTTCTTCAAAATATCTAATTAATTCTGTTGCAGTCATATTTTTTGTTTCTTCATAAATCTCTTCCTGTATTTTGTGTATTTCTCTCATCGTATTTGTTTCAACCATCTTCATCACTCCTCCTCCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 7 483860-486146 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 483860 29 100.0 38 ............................. CTTGCAAAGGTTAACAGAATTCGAATGAGGCTTGACCC 483927 29 100.0 38 ............................. AAAAATAACATTAAGGATTTAAAACGCAGATTTTTACA 483994 29 100.0 36 ............................. GATGTTTTTAAAAACGTGTTAACCGACGCAAAGAGG 484059 29 100.0 37 ............................. ATGGAGCTCACATACATACCAACGGGGCAGAAGATAC 484125 29 100.0 39 ............................. CCAATAAAGGATTTAGAAAATATTAAGCTTTTACAACAG 484193 29 100.0 37 ............................. AGCTTTGATTCCAGCATTTGTTAGTTGCATCATGTCT 484259 29 100.0 38 ............................. TGATTACACGCTTACTTACATTGTGCAAGAAGACGTAC 484326 29 100.0 38 ............................. AATAAACTCTATGTCTTCATAAACTTGCCGTTCCCATT 484393 29 100.0 36 ............................. AAGGAGCAAGACTGCACTTTATAACTGAGCTGCCAA 484458 29 100.0 36 ............................. AAAAGACTTGATGAAATAGTAGAAATAATTAAAGAA 484523 29 100.0 36 ............................. TTCAGGGTGGCTTTTCAGTTTTTTTCGGCACGCTCA 484588 29 100.0 39 ............................. TTTATATGTAAAACGCAGCAAGACTACTCATCAGCCGCC 484656 29 100.0 35 ............................. GTAGTGCCAACAGTCCTGCAACTTATACAACAACA 484720 29 100.0 38 ............................. GTATGCTTTAACTTTTTGAGTTAAGTTATATACTCTGA 484787 29 100.0 38 ............................. AAATCAAGCTGTCTTACCTGCTTTACCCAGTCTAACAA 484854 29 100.0 37 ............................. TATAAGTAATAGCAATAACTGGACGTGGTAATGTTTT 484920 29 100.0 37 ............................. TAAACATATTCATTATCATTATCTTGAATAAGAACTT 484986 29 100.0 36 ............................. TAGTCTATTTTGAGCCTATAGTCTGGTTTGAATGTT 485051 29 100.0 38 ............................. CTTACTATCAAGTTTTGGTAATTTTCGTTATTCAATTT 485118 29 100.0 38 ............................. CGAGCACTTGTAAATATTACAAATGCTCACGGCTGTTG 485185 29 100.0 38 ............................. CATTTCGTTTTTTGCTCTATAATTTTTAAAACACGCAA 485252 29 100.0 40 ............................. CCATGAACCATCCAGCAAGGCTTTTTTCTCATTCTCTGGT 485321 29 100.0 37 ............................. TCTGTAAACAACAGCTTGTCTTCAAATTCAACAAAGG 485387 29 100.0 36 ............................. TTGTAATGAAATATTTTGTTTGTTTTAATTCTTGCA 485452 29 100.0 38 ............................. TTTTAAAGAAAATTCCCACGTTTAAATTCCACAAAAAG 485519 29 100.0 38 ............................. AGCTTTTTTCTCCGGAAGCCACCTTGCTTCTCCAGCGA 485586 29 100.0 38 ............................. TGCAAAAGTGGTTTTTCCAGTACCGGATCGTCCATATA 485653 29 100.0 38 ............................. GGATAATCAAAAGGAATAATCCAGTTACAATGTGGTGT 485720 29 100.0 37 ............................. CCATCTGAAAAGCCCGCTATAAATTCTTTAAAACCTC 485786 29 100.0 36 ............................. CGTTTCGATATTGTTTACTCTGCTCTGTAGTGTTGG 485851 29 100.0 37 ............................. TTTTAATATTTCATCAAGAAGCCTCCAAGTAACTTCG 485917 29 100.0 39 ............................. CGATCATTCACATCCAAGATTAATAAAGGCTTGGGGGCA 485985 29 100.0 38 ............................. TAAAGGTGAATTTAATAATTAAAACGGAACTAACTATT 486052 29 100.0 37 ............................. TGGTTTTACGGATTGCTCTTGAAAGACGACAGATTTG 486118 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 35 29 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : GGTGATTGACAATTTTTGTAATCGTGACATATGATGTGAATGAAAAGCGTGTAAACAAGGTTCGAAAGATTTTGAAAAAGTATTTCACATGGGTACAGAACTCTGTATTTGAAGGTGAAATAACATACGGAAAGCTTGAAAAATGCAAACGCGAACTTTTTTCTGTGATAGAGAAGGACGAGGATTCAGTGTATTTTTATGAAATGGAATATAAAATTGTGTGCAACAAAAAAGTACTTGGACAGGAGAAAAACTATGATTCCATAATACTGTAAAGATGCTGCGAATACAATTTTATTCCAAATACAACCATTTTGCAGCAAACCTCAAAATCAGTATTATGGTCCAAAAGCCTTATCATTCCTGTAAAAGCTTATTTTTTTGAAATCAAAACCAAAAACCAATTCCCCCTTTGCTGCAAATATATAACCTTGCAAAGTTTGGGCAAATATACTATACTATTGATATAATCTGAACTGAGGGCATTTTCATAAGAATGG # Right flank : CTCATAGGGTTTCACTTCTTCTCCCTCCTCGTATAATATGATTATCAAATCAATAAAAAATTCATATCTCAATTGGTACATTAAATTATTAGTACCAATTGATTACTGGAAATTCATTAAAATAAATTCCCATTCTTAAAACACTCACTTCTTAAAAATTGAATATTAAAATTGACTGCTACAGCTTAAATTTGCCCTTTATCTTTGGTAAACTAAAATCAGAAAAAAGTTAAGCCTGATTTTAGTTTGTTGGATATTTTTTGTCACCCCCTGCTGGACGTGCTTTGATAACTGCACGCCACAGCTTGTGAGAGACTGAACCCCAAAGGATTACATGAGTAATGTTTACTCGTTTGCTGTGCATGGTCAGTTTACCACATCTGATTTGAGCATATCAGATGTGTGCACCCTGTAAACTGCTCCGTAGCTCTAATATCGGCGAGGCTGCATTACATGTAATCCCCAGGGATAAAGGGCTTAACTCTTTTCCTAACACCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 488073-490219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 488073 29 100.0 38 ............................. ATCTCATTTTACAAACAGAGATTGGTGTGTTTTTGTTT 488140 29 100.0 37 ............................. AATTATTTCCTTTTCAGGCCTGCAATAAATAATTATG 488206 29 100.0 38 ............................. GTCTAGATTTTTCATAAACTCCCACAGCTTTTGCCTTT 488273 29 100.0 36 ............................. TTTCTTCGATTATCCATATCCACCCTTTCTTTTGAG 488338 29 100.0 38 ............................. ATCTTCGTTAAATTCTATTTCTCCCGTCAAGTAATTGA 488405 29 100.0 36 ............................. AATTAATCTGTTTTCATCAGAATATAAAGCAGGGTC 488470 29 100.0 36 ............................. TTTCGTCTATTCCCCAAATATAGCCACTTTTCTGCG 488535 29 100.0 36 ............................. TGCTTTGACGTTCAGCTTGTTGATATTGATAAAGTT 488600 29 100.0 38 ............................. AAGCAGTTGTTAAATATCTCACAGCACTTGAATTTGAG 488667 29 100.0 36 ............................. TCGCTAACGGTGCCATCATTAGCCTTCTAAGTGCTG 488732 29 100.0 38 ............................. CAACTTGTGGATGCTAATCAATTAAAACTTTTAAAGGA 488799 29 100.0 37 ............................. TTGTACTTAATTGTGCAATTTTCTGGGTTAATACCTG 488865 29 100.0 39 ............................. CATAGCCCTTAATGGTGACCATGATAAGTTTGTCGCTGA 488933 29 100.0 38 ............................. TTATACAAGCGACAAGAAAATATCTTAAAGACGCAGAA 489000 29 100.0 37 ............................. CTTTGTATTAATACTTCAATGCTATTACGCAAATCTA 489066 29 100.0 37 ............................. GAGTTTGTAGACGGGCAAGCTTATCTTATACTCAACA 489132 29 100.0 38 ............................. TGGGCTTTGCCGGTTGGCTTTGCCCTTGGCAATCCCCA 489199 29 100.0 37 ............................. ATACTGTACCCTGCTGGACCAAGCCTTTACATGACTT 489265 29 100.0 39 ............................. TTGGGGATTGCCCGTGAGGGCAAAACAAAAAATGGGAGG 489333 29 100.0 36 ............................. TAACAACGATTGAGTGCTTATTTAACAACGATTGAG 489398 29 100.0 38 ............................. AAAAGAAAATAGGTGAGGTTAAATGTTAGAAGAGGTTA 489465 29 100.0 38 ............................. ATTGCTACAGCTAATGAATTAACAAACATACTATTAAG 489532 29 100.0 34 ............................. GATACTATAAAGCAATAAATGTTTGCAAAAAACA 489595 29 100.0 38 ............................. ATTGCTACAGCTAATGAATTAACAAACATACTATTAAG 489662 29 100.0 38 ............................. CTATGCTTTCTTCTCTCTGTAAATCAGAACTATATCTG 489729 29 100.0 38 ............................. CACATCAGAACAGAAGATGCTGCGTTGAAAAAATTAAT 489796 29 100.0 36 ............................. TCCTAACACTATAGGCTTAAAACTAACAGTTTTAAA 489861 29 100.0 38 ............................. CGCAAATACACAGATGTCTTTACAGCTTCTGCAAGTCC 489928 29 100.0 38 ............................. AAGACAGACCTAAAAACAAAAAGAACAGGTGAGGTTAA 489995 29 100.0 36 ............................. AGAGAACGGAAGAATTAGAATACCTGCTTTCTTGAA 490060 29 100.0 37 ............................. GCTAATTGTCCTTTTGCTGTTTTTGCTGCTTTCGCTA 490126 29 96.6 36 ........C.................... AAAAATGTAAATATAGTTGTTATCGGTAAAAAAATG 490191 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.9 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : AATCGGTGATATCAAGCGCTTCAAAAATGAAGCTGCTTTAGCTAAATACTCTGGCCTGGTTTGGACTCAATATCAGTCAGGCAATTTCAATGCCCAAGATGTCTCATTAGCTAAGTGTGGTAACCAATACCTGAGATACTATCTTGTTGAAGCTGCTAACTGTGTAAGGGTGCACACAGTACGCTACAAAGCTTTCTACAACAAGAAGTTCTCAGAGGTTACCAAACACCAGCATAAACGTGCCCTCGTCCTCACCGCAAGACGCTTAATTCCTCTGATCTTTGCAATGCTCAGCAAAGGTCAAATATATCAAGAAAGAGGTGATGTTTACAATACTTAGTTAATCTCAAATTTTTAGTTTAATAATTTTCTCTGAACAAGCTGCCAGTTAAATTTTACCATGCTGTGCGGCCAGGTATTTTATTGCCTTTTTTCGCCTAATAATCTAAAAAATTTTTCTTAAAAACCCTCTTGACATTTTACCGTTTGTCTCTTGTAAT # Right flank : CACATCAAGACCAGCTAATTAAAGTCAAGAGTTTTTTTAAAAAATTTTGACACCATTTTATGGTATAAGATTCTTTAAAGAGGGCGCAAAAAGGTAAGCCATCCATTAGAAGTTGACATAACATATGGAGGCTGAGTAGTGTTATTGTTAACTAATGTTTCGTAAACAGAACAATTGTTTATGCACTACAAACTGCAGTTTTATTAAAGTATTTTTGAATATGTTCTTCTGGAGTTCTAAGTTCAAAAGGTTTTTTATCGCGCATAACAGCAAAGATAATACAAATAATTTTTCTCATAACAGCACCTAATGCAACTTTTTTGGGCTTTTGTTGGCACTTTTTCTGATAGTATTCGAATAATACAGGATTACAAGGTTTAGAATTTCTTTTTGTTCTGATATTGGCAAGAGCAATTGTAAATAAGATTCTTCGCAAGATTTTAGAACCACGTTTAGACATTTTATTTTTTGTGCCAACAAATTGCCCCGATTGATTTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 9 494805-492193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 494804 29 100.0 39 ............................. TCCCTGTTCCGTAACGACTTATATCTAACGCTACTTCAT 494736 29 100.0 38 ............................. CAGGTAGCTGTATTAGGGAACATAGTACTGACTGAATG 494669 29 100.0 38 ............................. ATAAATGACCTGATAGTAATAATGGTTTATCTGCCTTA 494602 29 100.0 37 ............................. GTATTAATTGTATTTAGTTCAATAACGTTTAGTTTTC 494536 29 100.0 37 ............................. GCTTTAACAGGTTTAACAGCGGCCTTAATTTTAACAA 494470 29 100.0 39 ............................. TTTTTACTAATTTTCTGACTATTTCAGGGAGTATTTCTT 494402 29 100.0 38 ............................. TGAAGACGTCAACGTTGAAGAAGAAATAATAGAAAAAA 494335 29 100.0 36 ............................. TTTGAACCCTCCTTCACTTGAAATACAAAATGACCA 494270 29 100.0 38 ............................. CATATAAGCCCGGCAATAAGTACCAAGTGTCCGTCCAA 494203 29 100.0 37 ............................. CAACAAGAAGGACGATAGAGGGTGGCAGCGGGGTGTA 494137 29 100.0 37 ............................. CAAACGCAAGTGAGTTTTTAGCTTGGGCAAAGACACA 494071 29 100.0 38 ............................. TTTTGTTTTAAATAAGCTTTTACAGAAAACTTGATAAT 494004 29 100.0 38 ............................. TGAAAAATACAAAGAACAATTGTTCAACAATCTTGGGC 493937 29 100.0 38 ............................. ATCATTTCCCAGCTTCTACGCAAATTTTCCCTTGCTTC 493870 29 100.0 36 ............................. TTTTTGGTTTTGAACCCTTTTAGTTCTTCAAGTATT 493805 29 100.0 37 ............................. ATATGGCGACTTAACTTATGCTGATGCGTTTTATTCA 493739 29 96.6 38 ....T........................ TTGAAGAGTTAACAATTGAAGAGATTATTACTTTTCTT 493672 29 100.0 38 ............................. ATTTTGTATTTACCGAATCTATATTTCTTACCTTCAAT 493605 29 100.0 37 ............................. AATTGGACATGGTAACAGAATTATTTTCGAAAGTAAC 493539 29 100.0 37 ............................. GCAGTGTGTGCAGCTGCGGGTATAGTAGCAGTTACTG 493473 29 100.0 38 ............................. TTTTCAGAGATAGTAAGTGGCACAAAATTATTACAAAC 493406 29 100.0 39 ............................. CAGGATTCACAAAAGAAGAAATTCTAAAAGGTAAGTATC 493338 29 100.0 36 ............................. TACTGTTCTTTTTTGTTATCCAAATTTGGATTGAAA 493273 29 100.0 31 ............................. TTCCTTGTCGTGCGAAAAACAAAAAACGAAC 493213 29 100.0 36 ............................. GTCTGAAAATCCCGCTATATACTCTTTGAAACCTCC 493148 29 100.0 39 ............................. TTTGTTGAGTATAAGATAAGCTTGCCCGTCTACAAACTC 493080 29 100.0 37 ............................. TGCTTGTAAAAAGCACTCTTAAAGAAGGATATGATTA 493014 29 100.0 37 ............................. GCAGAGTGTAGGCGTGAAATGTGGACAGCAGTGCAGT 492948 29 100.0 36 ............................. GAAGAACGTTTAGAAAAGGGAATAGATGAGGCAATA 492883 29 100.0 37 ............................. GTAAAATCATCTTTTGATAAAGTTCAAGTTTAAGCGG 492817 29 100.0 37 ............................. TCTGCGTCTTTAAGATATTTTCTTGTCGCTTGTATAA 492751 29 100.0 37 ............................. TCGTGGCAGCAAAACAGGTTTGCAGGCACAAAAAACT 492685 29 100.0 37 ............................. TTGCAGCGATTATACCAAAAACAGTAACTTTGCTAAA 492619 29 100.0 37 ............................. GAGTATTTTTCACAGTGTACTATCCAGACCCAATCAG 492553 29 100.0 37 ............................. GATTACAAAAATTATTCAAATGTGTTAGTTGATATCA 492487 29 100.0 39 ............................. TGGCGCATTTTCCCTTTTAATTTGCTGCCAGTTAGGATC 492419 29 100.0 36 ............................. GCTCAAGGAACGTTTGTGCATTGCCACTTTTCCCGC 492354 29 100.0 37 ............................. TCTTATTGGTTTAAGAGCAACTGAGAGTCCGAACCGA 492288 29 100.0 38 ............................. CATAAAACATTGAGTTAAGGCATATAACTTGTCTTCTT 492221 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 99.9 37 GTTTACATCCCTCATAGTTCAGATAAAAC # Left flank : AGCGGTAGAACTTTTGTATGAAGCTAAGATATTTGGACCTGATGTAATATTAGCAGATGCAGGTTATGATTGTACAAAGTGGTTTGATGTGGCTGATAGACTTGGAATAAAGTTTGTAGCGGGTATAAATAAGAGAAATACTAAGGATTTTAACAATGTCAAAAATATTCTGAGAGCACAAAACATAGAATTTTTAAGAAGTAAAGAAGGACAAAGAGTATATAAGCAAAGGATAAAAATTGAAAGATTATTTGGGAAGCTGAAAGGAGAATATAATTTAGAACAAGTACGGCTAAGAGGTTTTAGAACATATAAGAGACATGTTGACTGGATAATGGTTACTTATTTGATAGAGCTTTATATTCAAAAAATTGAAAACTGTAAATTTTCTTTTAAATATGCATGGAATAATTTATAGTCCCATATAGTTACATTAATAGTAGAATTATTTATTCAACAACTTAAGTTGAGAGAGCTTAAAAATGCAGAAACAGAGTTTG # Right flank : CTAACATCAAGGGGCATAGTTCACGCCCCCTTGTATAATTATTTTCGTAAGACACATCAAAAAAATTCTAATAAAATAACAACCAAAGTTTCGGTTAACATAAGATTTTGAGTCTCATCCTTAAAATAACATCTCAAATACTACCTCTTTGAGAGGAAAGCAGCGCAAAGTCTCTTCCTGCTGCTTGTGGCTTCTAATCTTTAGCCACTTTAACGCTGGCCTCTTGCCAGCCATTCTAACTTTGATATAATTCTTTCTATCTGGGCATGGAATTTACCTGTACGCGCCCCCTGGGAACGGAACTTCTTTCCGTATACCCGTGAAAAAGATTATTATTCCATTCCAGGTAAGTCTAAACTATTTGGCTGGTTGAGGCCAGCTTAGATCCTAATCAAAGCTGGTTCCTCGCATCACGTGCAAGGTTGTATACTTACCTTTGCTCGGAATGGAAAACTCATGCCCTAATTCAATTTCAAAATCACTTGCAGGGAGGTTTAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 10 495966-498656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LACO01000001.1 Caldicellulosiruptor morganii strain Rt8.B8 N908DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 495966 29 100.0 38 ............................. TTGCTTGTGATTTTAGAAAGAAAACAATTAGTTGTTCA 496033 29 100.0 38 ............................. GTATAACCATAATTAAGTTTATCATACATACTAACATG 496100 29 100.0 37 ............................. GTTTTGTTTCTGCTTGATGAGTTTGCCAATATTGGCG 496166 29 100.0 37 ............................. AAAATTCAAAAGATCTTTTCCGCCGAAACGCAGGTAT 496232 29 100.0 38 ............................. CTATATTGCGAATACTGCGGGCAGAATGTGTTAAAAAG 496299 29 100.0 34 ............................. TGTTTTTATCTTTCCCTTTTGAACACCCAGTAAA 496362 29 100.0 35 ............................. TACTTCTATGCTTTCTTCATCTTCTACTTCAAAAT 496426 29 100.0 37 ............................. ACTACACTAGCATCCCAACGCTTTGCCTGTACGTATA 496492 29 100.0 38 ............................. TCTTACGGTGCTAATTGAAGTTTACCGCTTCTTATCTG 496559 29 100.0 38 ............................. CAACTACTAACTTTTGAGTTTGTTGTCGACGATGATGG 496626 29 100.0 37 ............................. CTGATTGTGTTGAGTAATAATTCCCAGCCGCCCCGCC 496692 29 100.0 37 ............................. TTTCAATTCCGCATTGCTCATGATAGTTCACCTTCAA 496758 29 96.6 38 .............C............... TTATTACTTTACTGATGAGTATTATTGCAACATTTATA 496825 29 100.0 39 ............................. GAATACAGGAGCGCGTTTTTTAAGAGATTACTTGGGAAA 496893 29 100.0 38 ............................. TAGCAGGAGCAGGTGCTTATGCGTTATCACAGTTGAAC 496960 29 100.0 38 ............................. ATTGCACTTTCTACTTCTGCTACTACTATTTTTCTTAC 497027 29 100.0 38 ............................. AAATATAGTCTATTTCCTTATCAGTAAGCTCTGGATTA 497094 29 100.0 38 ............................. TGAAATAATTAATCTTCTTTATCTGTCCTTCATAAACA 497161 29 100.0 39 ............................. ATATATCTTTCAGCAAATAAAATACCTGTCTTATATCCT 497229 29 100.0 38 ............................. AATTGCTGGTGAACAAGGTTAGGCTTTGCAATCTCCAA 497296 29 100.0 38 ............................. ATAAAGTCGTCCATCATAAGAAGACTTGTTGTAAATAA 497363 29 100.0 38 ............................. TCTTTATTTCTTTTAATATCTGCTTTTTAACTTGTGCA 497430 29 100.0 36 ............................. TTTTTCAAATACTTTTCTGCTGTTTCTGCCATTTTG 497495 29 100.0 40 ............................. CTGTGGATTGACGTTTCAAAATATGCAGCGGCTGAACAGA 497564 29 100.0 38 ............................. GCGGGGAGAGTGTATTTAGAGGCAGCGAAGGAAGTATT 497631 29 100.0 36 ............................. CTGGAGTCATTATTGATGCAAATCTAACTCCCAAGC 497696 29 100.0 37 ............................. CTGAGCAATTATATGCTTGTTATTTTCAGCGACATAG 497762 29 100.0 36 ............................. TATATTAAGCCACCATTTGGAGAATCTGCTGATACA 497827 29 100.0 37 ............................. TAAATAATATTCGTGATAAATATAAGAGAAAAAGAAG 497893 29 100.0 37 ............................. TCGTCTTTTGGCTGTCAAGGGCAAGCTCGCTGTCGCT 497959 29 100.0 38 ............................. CCAATAAATGGTGTGTTGCCTGTAGACCAATATCTACC 498026 29 100.0 37 ............................. CTTACATAACAACAAAACACAAACAGCCGGGCTTTGA 498092 29 100.0 38 ............................. TCATTATTAATTCAAAAGATAGAATATTTTGTAACAGG 498159 29 100.0 38 ............................. TCATTATTAATTCAAAAGATAGAATATTTTGTAACAGG 498226 29 100.0 39 ............................. AATCTTAGTGCAGCTCAAATTAACAGAATGTTCAAGGAA 498294 29 100.0 37 ............................. TGATGAGATTGTTTAGACTGTCGTAATATCGCTGATA 498360 29 100.0 39 ............................. TACAAACAACACAGCAAAAATTTCTTGTGTCATAACAAA 498428 29 100.0 39 ............................. CTCTGAAAGGTGGGAGAATATGGTAGAATTCATAGGATA 498496 29 100.0 36 ............................. GAAAAAGAAATAGAGATGAAAAGATTAAGTGAGTTG 498561 29 96.6 39 ............................A CTGAGATTGAACCTAAGTTTAAACCTCCTGTTTTTGCTA 498629 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ======================================== ================== 41 29 99.2 38 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : AGAATCTATAGCACAAACTCTTGTCTTGGGATCTATTTCTCTTACTAAAATTCTTGCTATTGCTTCTATATATTCTTCTTCAATCATTTTAGCCCATTTTGAAAAATATGAATGATCGGGGCTCTTTTCTATTCCTATGACCTTTCTAAATTCTTCATCTTCATTTATCTTGTACTCTAATTCCCTAAAGCTGTTTATCCTATTTTTGACTTTATAAACAAAACAAGCTATTATATGGCTCAGCTTAAATTTCTTCGGTCTTCCTCTTTTGTTGTTTTTTATCTTCAATCCTAAATCTTTTATTACTTTTTCAATTGTCATAAATATCTTTAAAAATTTTTGTTTTTGTGCTTTAATAAAATTAGTCATTGCCATCCTCCTTGCTTGGGTTTTTTAGTATTCTCTTCTTAAAATTTTATCTCAAGGAGGATGGTTTTTTCCATTTATAAATTTATTACTTTTATGTCAATATGTTTTATTCAACAAGCTATCTCTCAACT # Right flank : TAATGAACGAAAATGAGGAAAAATGAGCTGAAATGAGATTTGAAAAAATAAGGTAGCTCTTGGAAATTTGTCAATAATTTTGTGCATCTAATTTTTAGTGTAACTTGAAAAATTGTAAGATTTCGCAAGCATGGTGTTTAAAAAGAGATGCCCTATTTTTCAATTACTTTGCTTAAAATATTTATTTTAAAGCCAATTTTACAAGAATAATTATTGATTAAAAAAATATACCATAAAGGTAGATTTTTTATTCTGATATACAAATTGCAGTTTAACAGATATTCTAAAAGCTTTGTAAGAGCTGGGCAATTGAATTCAACTTGAGAGCAATACGTATTTAATACTTTGCTGGGGTTACTGTGTTTTTAGCTGCCTTAAAAATTACATCTTTTACCATTGCAATTAATTTCCTTTAATTCTTAACTTTGTAGTAGTCAAGTTTTATTTTAACTTCCGACCAGTAAATTTTTTTGAAAATAGGGTGGAGAATGTGCTAAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //