Array 1 30117-27404 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEDA01000043.1 Vibrio cholerae strain BD56 BD56_S56_L001_R1_001contig_43_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30116 28 100.0 33 ............................ TATGAAAGCTTGCGCCGTCATTTCACTGTGTCG 30055 28 100.0 33 ............................ CAAATCAAAGCGATGAAAGAGCATCTTTGACAC 29994 28 100.0 33 ............................ CAAGGCGCGGTGTGCTCTACCTTGGAACAAATC 29933 28 100.0 33 ............................ CATCAGTCGTTGACTTTCCCACTGGCGTAGCGT 29872 28 100.0 33 ............................ TTCTGTTGTGATCCATTTGGGGTGGTGTGGGGT 29811 28 100.0 34 ............................ CGGTACATGCACCATCAAGTTTAGCATTGATGGC 29749 28 100.0 33 ............................ TCAGCCGTTGCGTCATTCGCTGCGATCGCTTCT 29688 28 100.0 33 ............................ CATCAGTTGTCGTTATCTAACCTACAGTCGAAA 29627 28 100.0 33 ............................ CTCCCCATCAACTTCAAGTTCGATTTTGGTTAA 29566 28 100.0 33 ............................ TAAAAACTGATACAGCTTATCGGTCATATGTTA 29505 28 100.0 33 ............................ CCCAGATATATTGGGTCTGTGGCGTTCTTTGTT 29444 28 100.0 33 ............................ TTACACTATGGTAGTGATTGGTGTAATTGGTCT 29383 28 100.0 33 ............................ CAAGCGCACTTTAATGACCACGGTTGCGGTAAA 29322 28 100.0 33 ............................ CGATTAAGCCAAATTAACTGGCTTTGTTGGCAC 29261 28 100.0 33 ............................ CTATATCATCCCAAGTTCTGGAAAGTTAGATAG 29200 28 100.0 33 ............................ TGTTTCTTCGTTATGGTTAAAGGTGTTCTCAAG 29139 28 100.0 33 ............................ CTTCCGCTAACGCCACACCACATTGACGGCGAA 29078 28 100.0 33 ............................ TCCATGCGCCTGTTTCGTCTTGCTCTTGGATCA 29017 28 100.0 33 ............................ TAGGTGCGCTGTACCGTTGAAATCTCCTGTATT 28956 28 100.0 33 ............................ TCGTTGTAACCATGAAGGCCACGACCACGCATA 28895 28 100.0 33 ............................ GGATGCATTAAGTAAAACCGAGACCACGAATAT 28834 28 100.0 33 ............................ TCACCTTTGCTGTGTTTAAGCTTTCACTAGAAA 28773 28 100.0 33 ............................ TAATACTTGCGAAGGTGCGGAAATTGGCATTGC 28712 28 100.0 33 ............................ TAAGGGTTTATTAGCCCATACCGCTTGATAGTG 28651 28 100.0 33 ............................ CAACTAAAAGACATATTGGCTAAGCTAGATTGC 28590 28 100.0 33 ............................ TGAGGCTTGCTCGACTCTCGCCGCGCCTAGTTG 28529 28 100.0 33 ............................ CGCCCGATGTTCAATTTGTTGCTACTCATCGAC 28468 28 100.0 33 ............................ TCAAATGCTTCCTCGCGCTGGCGTGCATGTCGC 28407 28 100.0 33 ............................ CATTCTGCAAAAGAGGTCAGCTACGTTGAGGGG 28346 28 100.0 33 ............................ TCAAACGTGTACGCTCCTTGAAACCTCAACAGC 28285 28 100.0 33 ............................ CGAGCGATGAAGTTAATTGATGATTGGAAGCAG 28224 28 100.0 33 ............................ CGCTGACTCGCTTAGCTTAACCTTTCCAGTCGT 28163 28 100.0 33 ............................ TCCCACGCTAGTCCTTTGTCTCTTCCTCCTTGT 28102 28 100.0 33 ............................ TAGTGCAAAAGTTTTTGTGAGAGCGAAGAGTTG 28041 28 100.0 33 ............................ TGTAGCCCTGAGCCATCCACTTAACCACGGTGT 27980 28 100.0 33 ............................ TAGAGCTAAATTCGATATATCAAAAGAGGATTT 27919 28 100.0 33 ............................ TAAAAGTGGGGTTCGCACCTGCAGAGAGCATCC 27858 28 100.0 33 ............................ CGCAAGATGGTTCTAATTCCTTTGGCTCATTCA 27797 28 100.0 33 ............................ TTTAAGATCCTCAACTGGCGCGCTGCATTAGCG 27736 28 100.0 33 ............................ TACAGAATTGAGCTTTCTGCGTCTGAGTGGCTG 27675 28 100.0 33 ............................ TATCCAGTGCATGATTGATGATCTTGCAATCGC 27614 28 100.0 33 ............................ TTTGTGCGCCGTTTTCAGGGTTGATGATTTTCA 27553 28 100.0 33 ............................ CGTCTGGCGTTGGGTCTTTTGATGATTGTCGAG 27492 28 100.0 33 ............................ CTCACAGAGCTGATCATCGAAGCCCGTGAAGAC 27431 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 45 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //