Array 1 261847-260005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUA01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain sg_8326 8326_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 261846 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 261785 29 100.0 33 ............................. GGTGCTGACACCTCCAGTGTTTATGCGTTGCGG 261723 29 100.0 32 ............................. ACTTACGACCATTTAGACAAGGCGCAAAATTT 261662 29 100.0 32 ............................. CGACCGGACTCAACCGTATTAAAGCGCATATA 261601 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 261540 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 261479 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 261418 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 261357 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 261296 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 261235 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 261174 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 261113 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 261052 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 260991 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 260930 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 260869 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 260808 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 260747 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 260686 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 260583 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 260522 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 260461 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 260400 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 260339 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 260278 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 260217 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 260156 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 260095 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 260034 29 96.6 0 A............................ | A [260007] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 280207-278105 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAUA01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain sg_8326 8326_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 280206 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 280145 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 280084 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 280023 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 279962 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 279901 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 279840 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 279779 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 279718 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 279657 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 279596 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 279535 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 279474 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 279413 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 279352 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 279291 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 279230 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 279169 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 279108 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 279047 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 278986 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 278925 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 278864 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 278803 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 278742 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 278681 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 278620 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 278559 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 278498 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 278437 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 278376 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 278315 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 278254 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 278193 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 278132 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //