Array 1 682-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNI01000004.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1582 NODE_4_length_217499_cov_1.26995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 681 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 620 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 559 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 498 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 437 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 376 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 315 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 254 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 193 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 132 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNI01000013.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1582 NODE_13_length_124905_cov_1.472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 118 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 240 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 301 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 362 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 485 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 546 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 607 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 668 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 729 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 790 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 851 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 912 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCTTCCGATCTGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17072-18548 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNI01000013.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_1582 NODE_13_length_124905_cov_1.472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17072 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17133 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17195 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17256 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17317 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17378 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17439 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17500 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17561 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17622 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17683 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17744 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17805 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17867 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 17928 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [17970] 17970 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18031 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18092 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18153 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18214 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18275 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18336 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18397 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18458 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18519 29 96.6 0 A............................ | A [18545] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //