Array 1 59-951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYA01000127.1 Neisseria meningitidis strain NM1901, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59 36 100.0 30 .................................... TATAACAACCATTTTGTTATTTCGATTTTT 125 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 191 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 256 36 100.0 30 .................................... CTAAATAGAAATACATACGCCGAGTAATTA 322 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 388 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 454 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 520 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 586 36 100.0 30 .................................... TTGATGCAGGCTGCTCCGTCATCGTCTGCA 652 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 718 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 784 36 100.0 30 .................................... CTTATGCCTGTTATTGTTTTCAGCCTTTTG 850 36 100.0 30 .................................... CTGTTGATGACGGATGTGTCGGGTTGCGGA 916 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATAAAACCAACCGGGTATTCATACACAGCCAAG # Right flank : CTTTAACTTTGACCGTGTGCAATCCAGTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 17178-16680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYA01000042.1 Neisseria meningitidis strain NM1901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17177 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17111 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17045 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16979 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16913 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16847 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 16781 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 16715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //