Array 1 38-214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000017.1 Campylobacter canadensis strain L268 L268_contig00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 38 36 100.0 34 .................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGCT 108 36 100.0 35 .................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCTT 179 36 88.9 0 ...............................A.GGT | ========== ====== ====== ====== ==================================== =================================== ================== 3 36 96.3 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATGAAG # Right flank : TTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 37-2317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000002.1 Campylobacter canadensis strain L268 L268_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 37 37 100.0 35 ..................................... CTCAAGAATTGGTAGCAAATGGATTTTAAAAGGCT 109 37 100.0 35 ..................................... AATATTTTTAATAGTATTCAATCAACTTTATATAA 181 37 100.0 35 ..................................... GAAGGCGGGGTGCAAACAGGCAGTCAGACACAAAC 253 37 100.0 35 ..................................... AAAACGAAAAAGTAGAAGAAGCATTAGGCACTGAT 325 37 100.0 34 ..................................... CTAAGACGCTTAGCACCTAATATTGAGCATATAG 396 37 100.0 34 ..................................... AAAACTTGGCTCCTTACTTACGATGTGTAAGATA 467 37 100.0 37 ..................................... CAAAGGTGAAAGCTCATTAATGCTTTCATCTTTTATA 541 37 100.0 34 ..................................... TTGTAGAGCTTGATGATACTACTTTAGTAAAGCT 612 37 100.0 36 ..................................... ATCAACATTAATTAAATATTCATTATTGACATATGA 685 37 100.0 36 ..................................... TTTGATTCGGACTACCGGTGCTGGCGTTTTGGATAA 758 37 100.0 35 ..................................... GAAGGCGGGGTACAAACAGGCAGTCAGACACAAAC 830 37 100.0 34 ..................................... TTGATAATAAAGCAACTTTTATTGCTCACGAAAT 901 37 100.0 35 ..................................... CAAAATTTGCGATATAATGACGATAATGAACTGAA 973 37 100.0 35 ..................................... CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG 1045 37 100.0 35 ..................................... TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC 1117 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 1190 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 1263 37 100.0 35 ..................................... AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT 1335 37 100.0 36 ..................................... ATGTTGAAAGATATGCTAATTTTGAAGAGTATGAAA 1408 37 100.0 35 ..................................... CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT 1480 37 100.0 35 ..................................... CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA 1552 37 100.0 37 ..................................... TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA 1626 37 100.0 36 ..................................... CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC 1699 37 100.0 36 ..................................... TACAACACAAATGTATTAATTCAAACTTGCCATAAA 1772 37 100.0 36 ..................................... CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA 1845 37 100.0 35 ..................................... AACAAGGAACGTAAGTCTCTTGTAGTTAGCAAATC 1917 37 100.0 35 ..................................... AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA 1989 37 100.0 37 ..................................... AAGGCAGTAATACCCTTAGCACGAGCGATGATAGCAA 2063 37 100.0 36 ..................................... ATTAGGACTTAATCCAGTTTTAGCAGCAGTTAAAAT 2136 37 100.0 34 ..................................... TATCTTCTTTGGCTTTTAGCGGTGGTGGTGATGG 2207 37 100.0 37 ..................................... ATATAATTTTTAACAATCAGCGTTTTATTATTAAAAA 2281 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 32 37 100.0 35 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : GCTCAAGAATTGGTAGCAAATGGATTTTAAAAGGCTG # Right flank : GAGCTAGATAAACTTGTCTAGCTTGTAAGGATTTGAGCTAACTTAAAGTTTGCTTATTTTTCCACTTTGAAAATTTCGGCAAAAAACAGCCGTTTTGTGGAAAAATAAGAAAAATTTAAGCTTATGGTTAAGAATTTTAGCCTAATATATCAACTCAAACCTAATTCTAGCAAAATATTTAAGAGTTTGAAATCACCACAAGGTTGGTAAAATATCGGGCAACTGGCTTAGCCACCCCGATAAATCTTATTAGTTAATCTTTGCTAAATAAAATTCCATTAAAACATAAATTTAGGAGAAATCATGAAAACTCACATTAGTATAGATATGGGAGCGAAAAATAATGGGGTGTTTTTAGCTCATACAAAAGATGGCAAGATTATAGATAAAACTGCTACGAATTATATCTTTGAACCATCTTCTATAAATTTTTTAAAAAAAGATAGAACCAAGAAAAGACATCAAAGAAGAGGTTTTAAAAGAACAAGACTAGCTAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 37260-38549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000002.1 Campylobacter canadensis strain L268 L268_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 37260 35 100.0 31 ................................... TTTAAATAACTGCGATGATAGCTTTTTAATT 37326 35 100.0 31 ................................... TTTTCTGTGCGAAAAGGTTTAGATAGTTATA 37392 35 100.0 31 ................................... TATCAATATCCACTTTACCTAATGTACAATC 37458 35 100.0 31 ................................... TTAATGCATTAACAACCTTTGTTGGTGTTAA 37524 35 100.0 31 ................................... TCATATTAAATCAAATGGATTTAGATGATAG 37590 35 100.0 32 ................................... TAAAATATACGCAAAATGCTAAAAAAAAATGT 37657 35 100.0 31 ................................... TTATTTTTTCTTTTTTATTTTTTATTCTTTT 37723 35 100.0 31 ................................... TACTTTTTTTACTAAATATAAAGATGAAAGC 37789 35 100.0 31 ................................... CTTTGATGCACGTATCGACGCTTTATGTAAA 37855 35 100.0 31 ................................... CCAATTTACTCAAGATTATATTTACGCAGTA 37921 35 97.1 31 .........................T......... CTTATGATTGTAAAATCAGCTTTAAAGAACT 37987 35 100.0 31 ................................... CGCTGTTTTTAGATTTTATACTAATTCTGAT 38053 35 100.0 31 ................................... CAAGAATTAATTATTTTTCTTGTAAGTAATT 38119 35 97.1 30 ......A............................ CTTGCTTGGCTATAAATGTGAATCTTCTTT 38184 35 100.0 31 ................................... CTAAAACAAACCTAACCTTTAAAAAATTTAT 38250 35 100.0 31 ................................... CCATTTTTATTCCTTAATATTTTTTAAATGA 38316 35 100.0 32 ................................... CTCGTGGCGGTTATGAATGTTTTAGCTCTTCT 38383 35 100.0 31 ................................... CTAACTCTTTAACTCCAAAAACTTCAAAAAA 38449 35 100.0 31 ................................... CTAATGATAAAGTATATAGACTTTATCATTC 38515 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================ ================== 20 35 99.7 31 ATTTTAGCATAAAAGAATTTACAAAGGGACTAAAA # Left flank : GTAAATTTAGAAACAATCTTATAAAATTAGGTTATTTTATGCTGCAATTTAGCGTTTATATGCGTATTTGCAAGGGTTTAAGTTCTGCAAAAAGTTCTCTTGAAAATGTAAAAAAGATTTTGCCACCTTATGGAAATGTGAGAGCTTTAATCATCACTGAAAAGCAGTTTGATAAAATAGAGCTTTTGCTTGGTGGCATGTCTTTTAATGAAGAAAAAAATAATGAAGATAATTTTTCTTTGTTTGATTGTTTGCTTGAAAAAGAAAATACTAGCGAAAATATTGATAAAAATGATGATTTTTTTGAAGAATTTTAAAAACTAATTTTAAAGATTTTATAACAAAAAATATTATTGAAAGCGGTTTTAGGGGATTGTAACCCCGCAAAGTCCCGCAAACTTTTTATTTTAGTCCCTTTGTAAATTCTTAGCTTTATTATATATATTTTTGCTAATTTTTTTCTTAAAAAAGCCCTTTTTGTCGTTGTTTTAGTAAGGTCT # Right flank : ATTTAATTTTTTGTGTTTTTGCTTGGCTTTTATAAGCGATAAGCTTAGCTAAAAACTCATCGTTTTCAATTAAATCTATAAACATTTCTAAATCTAACCCCATTATTTCTCCTTTTTATTGTAAATATTACAAAATATTTTGTAATTTTAATAAATATATACTAAAATACTCTTGCAATTAAAAAAGGAGAAAAAATGAGTGGAAAAGAATTTAATGAAAGAATAAAAAAATTAGGCTTAAGTGTAAGCGAGTTTGCAGAATTTACAGGACTTACAAAAGACGCTGTTTATGGCTGGAGTAGAAGCAGTAAAACAACGCCTGAATGGGTGAAATCTTGGCTAGATAATTATGAAAAAGCACTACTTTTAGAAAATATAAAAAATGCTTTTTCACAAGCGTTTTTAATAGATAAAAAATAATTGCAAATAAATTCTATGAATTTTATAGAAATTGTTTTGTATATTTTAAGAAAATCTAAAATAAGTTTTAAATAATTTAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAAAAGAATTTACAAAGGGACTAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 2470-1307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000045.1 Campylobacter canadensis strain L268 L268_contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2469 36 100.0 35 .................................... CACGCTCGATGGCAAAGAAGAAGAATTTAATTATT 2398 36 100.0 33 .................................... TTAGGACAAGTGCATTTAATTGTATTTGACACA 2329 36 100.0 34 .................................... AGTACTAGGCGGAGCAATGTTCCGCACAAAACTC 2259 36 100.0 34 .................................... TAAGTCCTGCTCTCCGATTTTAACATCACCTACA 2189 36 100.0 35 .................................... TAACATCACCTACATAAGGAAGAAGACACATCTTG 2118 36 100.0 33 .................................... CTGTTTATAATTTCTACTCCAATATTGTTTTTT 2049 36 100.0 36 .................................... ATAATATCACTTTTGTTAAAGGTATCTGCAGCCGCT 1977 36 97.2 32 ....................C............... TAAAGGCTCTAAATCCGTATTATTTGCTTTAG 1909 36 97.2 36 ....................C............... AGTGAAGTGGTGGTCCACTACTATATAGTCAATACC 1837 36 97.2 32 ............A....................... TTTTTCTAAAATGTGATACGAGTCATCCTCTT 1769 36 94.4 35 CG.................................. TCTTTTAGACACAGCATATATATATGTATGCTGTT 1698 36 100.0 36 .................................... TTTTTTGCTGCAATTCTTTAACAGCAAAGTGTGTTT 1626 36 100.0 35 .................................... ACTTGATGAAACCAGATGAAAAATCATAAGTCGAA 1555 36 100.0 35 .................................... AATATACATCCTTGCTTGCAGTTTTTTTTCATATC 1484 36 100.0 34 .................................... AATAGGCTAATTGCTAATGCTTGACTTTTTAATG 1414 36 100.0 36 .................................... CTATTCTGTTTGTTTTACTTAAACTTCTCATCTTTT 1342 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 99.2 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : CAAACTGCTTTAACTCTTTTTGTGTTGGGTAA # Right flank : CCTTGCCAGCTTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATAATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTTAATCAAAGCTTGAAAACTAACAAAACTAAAAATGATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAAAACCAGCAAACAAAATCATTCATTGTTTAGCTAATGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 66580-65270 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000009.1 Campylobacter canadensis strain L268 L268_contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 66579 36 100.0 34 .................................... AATGTTATAGGCTCTATACTATTTATTGCGTATA 66509 36 100.0 34 .................................... AAAAAATATATTTTATCATTAAATTACATTAAAA 66439 36 100.0 32 .................................... TTCTAATTGCTAGTGGTGGGATAGCAAATGTT 66371 36 100.0 36 .................................... AACAATGTTCCGCATAATATACCATCTGCATCACTG 66299 36 100.0 35 .................................... TTTTAAACTCAATTAAATCCTCAATTGGAAAATTA 66228 36 100.0 37 .................................... GGAGTGAGATTGATTTTAAAAATAATATTATTAAAAT 66155 36 100.0 36 .................................... AACAATGTTCCGCATAATATACCATCTGCATCACTG 66083 36 100.0 36 .................................... CATAGGGTTATGTTTGCTAGTATTTCTACCATTATT 66011 36 100.0 32 .................................... TATTTTGAAAGACTTGCCAGCTTACTTTCAAA 65943 36 97.2 32 .............A...................... AAATCGCTCATTACCATTCTCCTGTAATTTTG 65875 36 100.0 34 .................................... ACAGGGGTAGCTACTAAAAGATTTTTTTACTTAT 65805 36 100.0 36 .................................... AGATATGGCGTATCGTTTACAACGATACATACCCCA 65733 36 100.0 33 .................................... TGGTATGATGCCACGTCTATGTATAATTCCATA 65664 36 100.0 35 .................................... GCTTGTTACCCAAATATTGTTCCATTCTCGATATT 65593 36 97.2 36 ...................T................ CAATACCCGCTAGAAGGGATAAATCTTTTGGACAAA 65521 36 97.2 37 ............A....................... TTTCAAATCTTGTTTTAATTTAGTATATTCATAAATA 65448 36 100.0 36 .................................... CTGTTTGGCAATTAACCCAACATTGATTCCCCCTAC 65376 36 100.0 35 .................................... TTTACATCAATTGCTTTAATTTTGTTTTTCATACT 65305 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.4 35 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TGAGTTATTTTACTTAACATTGTTAAAAATAATG # Right flank : CTTAGAATACTTTGGGATAAGATAAAAGATATTAGAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTATATCAAGATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAAGCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTAATCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 171-425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBG010000091.1 Campylobacter canadensis strain L268 L268_contig00102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 171 37 94.6 36 .......G............G................ TAAATGACCGTTGTAGTGTTGAAGAAATACGACTGC 244 37 100.0 36 ..................................... ATTTTAAAAATTACCTTAAAAAAAACCGCACTAAGG 317 37 100.0 35 ..................................... CTCAAGAATTGGTAGCAAATGGATTTTAAAAGGCT 389 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.7 36 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : AACACACTGCTTAATCTGTTATTTAATGTAAAAATACCACTTGCTAAAGAATATAGCTTTTTACCAAACTAACAATTAAGACTTACAATAATCAATATATTTTAGATAAATAATTTGGTTAGAGAAATTAAAGAAGTGCAGTAAGCAAAAGATAAATAAGAAGAAATTGTG # Right flank : CTCAAGAATTGGTAGCAAATGGATTTTA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //