Array 1 169221-169454 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVY01000009.1 Bittarella massiliensis strain BIOML-A1 scaffold19_size267365, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 169221 33 90.9 32 .........TA..C................... AACTGCCTCCAAAATCGTTGTATGAGACGTAC 169286 33 100.0 34 ................................. TGTCCTCGAAAATGCGGTAGTGGTTGCCGCCGGC 169353 33 93.9 36 ............A...................C TTGTAGGCCGACGCCTTGTCCCGGTAGCTGATGGAG 169422 33 78.8 0 ..........A.AC.......C.AC.......C | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 90.9 34 GTCGCACCCCGCGTGGGTGCGTGGATTGAAATA # Left flank : ATGGCGGCTGTGGCCCTCTACACTATCCGCCGCCGGCGCCGGACCGGTGCGGATGCCGAAAGGGTGGGGGACGAGCGCCCCGGTCTCCTCGGCAGGGACCTCTTCTTTTACAGTTTGGTCTCCGCCCTGGCAGCCCTGCTCTACCTGCTGCGGGGCTGTGCCCTCGACGGCATTGCCCTGTTGGCCGTCGCAGCAGTCGTTGTCGCCAGCGCCATTGCCGTCTCCCGGCGAAAGGCAGAGGGGGAGAGCGAGCACTAGTTAAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTGCGGACTGGGGCTTTTTCACAATGCTACGTCTCCCGGTGTGAAGGGCAAGCGAACAGGATTTTTCCAAGACCTTTGCACCGCGTGTGGGCAGTTGCAGGGGAGGAGTGATAGCGACAAAAGGGGACTTGTCGCTGCAAATTGACAGTATATTGGGGAAGCGGTATAGTAAAAAAGAAAGAGGATGAAGCGTTTTTGTGCTTTGTTGCT # Right flank : CCTCCCCAAGCACACTCCTGTCACCGTGGGTACATGGATAAACTTTCTAAGAAGTAGTAATCACGGCGACGAGACGGTTTGCCGCATCCCCCCGCGCCCTTCAAAACGGCGAGAACCCCACATTTGCGCGCAGCCCCACCATGCTGCCACCCCTTCCGCCTGAAAGCACCAACCGAGTTTTTGCCTCGCACGAGAGGAGTCGGCATAGAGGGGTTGCCCCACTTGCCCACCCAGCTCAAAGGGGGCAGGCCGCTTGCCTTCGCACCGTGACCAGGTGCGGGTGCAGAGAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTACAGCTGTGTGAAGATCCGCGCGCCTTTTGTGTTCAGCCACCCCCATATCACCAGGCAGAGGAGGACGGCGGCCGCAGTGGCCACAGCCGTGACCAAGACCATGGACAGGTGCAGGGCAAAACCGAGGCCGATGAACGCCGCGGCCAGAAGGGGAGTGGTGAAGTACCCCAAAAAGGAG # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 225317-225622 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVY01000009.1 Bittarella massiliensis strain BIOML-A1 scaffold19_size267365, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 225317 33 100.0 35 ................................. AAATATCGTAAAAGAGTTAAGCAAACAATGGTTAC 225385 33 100.0 36 ................................. AACTTGTAAAATACGCAACTTGCGCAGATACCCCGG 225454 33 100.0 34 ................................. AGCTTGACTTGTCCGAATGGAACGTGTATTATAA 225521 33 97.0 36 .........T....................... TCACTTCGGTGAGCCAGTCGCTGAGTGAATCGGTCA 225590 33 93.9 0 .........T......................C | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 36 GTCGTCCCCCCACGCAGGGGACGTGGATTGAAA # Left flank : CAGGCGCCGGTCCACTTTCTGGTCATCCCCAAAGCCCACATCGCCAGCTGCGACGAGCTGACCGAAGAAAACAGCGCCATTGTCGCCCACATCTTCGCCACCATCGCCAAGCTGGCGGGGGAGCTGGGGCTGAAAGACGGCTACCGCATCGTCAACAACTGCGGCAAAGACGGCGGCCAGACGGTGGGTCACCTGCACTTTCACGTGCTGGCCGGCCGCTCGTTGGCCTGGCCCCCGGGCTGATTGCCCTGCCCTTGCATATCCCTCGATTCAAAAGAGCTGGACGCGTCTGCGTCCAGCTCTTTTGCGCGCTTTTTACCCAATTCGCGGGTGCGAACCCCAAGTGCACACCCATTTGCCGGGAGGTTCGCACCGCAGAATACCGGCCTTTTGCGGTGGAATGGAGAGGTTTGGGAAAAATGGGATCTGCATTTGACAGGATTTTGTGGAAAGAGTATCCTAAAGAGGAAAGCAGCGTCTTGTTTTTGTGCTGTTTTGCT # Right flank : CTGGTATGTCCATGAAATCGCATGACCCCTCCCAGCGGATCGTCCCCTATTCGAGGACACAACCCAAAACTTTAGCGTCTGCACAGACACAGCCGCTGTGCAAACTTCCTATTCCAAAGCGCAACGCCCCACATACGCCTCACAACAAAAAGGAGCCGGAGCAGCACCTGCTGCTCCGGCTCCCTCTTTTTATCCACTTGATCTGTCAATTGAAGTTCAGACGATGACATTGCGGGGCTCTCCCCGGCAGAAGGCGGCGATGTTTTCCCCCAATAAGTCGACAAGGCGCTGGCGGGTCTCCAGCCCCTTCCAACCCATGTGGGGGGTGAGGACCACGTTGTCCAGGGTGTAGAGCGGGTTGTCCGGCCGGGGGGGCTCCTGCTCCAACACATCCAGTCCGGCCCCGGCAATTTGTCGGGCGGCCAGGGCCCGAATGAGGGCGGGCTCATCGATCAAAGCCCCACGGGAGGTGTTGATGAGAAAGGCGGTCGGTTTCATCT # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCCCACGCAGGGGACGTGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 31285-31512 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVY01000002.1 Bittarella massiliensis strain BIOML-A1 scaffold5_size597577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 31285 26 100.0 41 .......................... ATGGAGCGGATGTATCAGAGGGGCTTTTGCCGGGTCTCCTC 31352 26 100.0 41 .......................... TGGCCCTGGATGGCCCCGCCGGTGTCTTGCACCGTCTCCCT 31419 26 92.3 42 ...A..C................... GAGCTTGACCGTCGTCGCACAGGCCGCGACCCCCGTCTCCCC 31487 26 88.5 0 .......G......A...T....... | ========== ====== ====== ====== ========================== ========================================== ================== 4 26 95.2 42 CTCGCGTAGGGGGAGTGGATTGAAAT # Left flank : GTGCGCCGGGCGTCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGGCGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGGCAATCACACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCAGTTGTTTTGGCGGCTGCTGTCGGGGGGAAGGGCAACGTTTCATGCGCGTCCCCTCCCCTTCCCTGGGCTGAAGTGGGAAGGCGGCTGCGCGAAGGAAAGGGAAGAGGGCTGGGCGGCGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCCTTGCGCGGCGGGTGCGAAGGGCAAGCAGACAGAAAACGCCCGGGCCCTTCGCACCGGGAAAACGCCAAAATCAGGGCGAAAAAAGGGTCGCTCAAGGGGTAGGCGGACAGGGCGGTTGACAGCAGATTGGGGAAGTTGTATGGTAAAGACAATTAAACAGTCTCCTTTTTTGGAGATGTTTGCTGTCTCCTC # Right flank : TCAGAGGTTGCTGTTGGCAACCAGAGTAGGGGTGTAGTCTCTCCTCGCTCGTGGGAGTGGGCATTGGCTAAAACCCGCTGCCTTGCGGCCCTCTACTCCCGGCTTTCAAGTCCTCTTCTGTCTTGAAAAAGTGGGTGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACAAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGACGGTTTCGTCTTCCCCCTCCCGAGGAGCGATCCCGAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACACCCACCAAACCCAAAGAGAGAGGGGAAACAAGCCGTTTCCCCTCTCTCTTTTTGTCGGCAGCCGGCCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCACAGCCGACGATGCCGTCGGCACTCAGCCCGTTGCGCCGCTGATAGTTCACCACGGCGGTGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGTAGGGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 458847-458481 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVY01000002.1 Bittarella massiliensis strain BIOML-A1 scaffold5_size597577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 458846 33 97.0 34 ................................T TATGCCATTTTGTGGGATAGCAGCCGAGAGGCTG 458779 33 100.0 32 ................................. GTCTGTGTGTTGCGTATCCATACATAGAAAAG 458714 33 100.0 34 ................................. AACTAGCCTGTGGAGAAAGAAGGGGGTTCGTACC 458647 33 97.0 33 ................................C CCAAATCATCCACACAAATATAGTCCCAGTAAT 458581 33 84.8 34 ..........G..TA.....G...........T ACTCATTGGAGCATGAGAGGGAGCTTCGCGTCTT 458514 33 69.7 0 ....T......T..A.....GACC..A....CT | C [458485] ========== ====== ====== ====== ================================= ================================== ================== 6 33 91.4 34 GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Left flank : CGAGTATACCGGCTTGCGGCCGGGCGAGAAGCTCTATGAGGAACTGCTGATGGACGAAGAGGGGATGAAAGAGACCCCCTACGAAAAAATCTTCATCGGCCGGCCGATCGATATCTGTCCCGACGACCTCTGGCGCTCTCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAAATCGTGCCCACCTTTACCCCTACCCCCAACAATCACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAGGGCCGCTCTTTTGCGTCTGGGTGGAGAGCCGGGAGAAATAGAGACTTTGGTGCGAACCCCAAGTGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATATCGGCGTATTGCCGGGGAAAAGGGAAAGGCGGCGGATAGAGGAGATTGATTTGACAGGGTTTTGTGAAAAGGGGTATAGTAGAAGTGTAAATTGACACTGGTTTTTGTGCCAATTTGCT # Right flank : GCGCTTGTGCAACTGCCCTTCCCTTTTTGTCCCCCAACAAAGAGGGCCCCCGGGTATTCCCGGAGGCTCTCTTTTTACTCTATGGCATCAAAAGGTGATTATCCTTCGCCGCCGTTCTGGTTTCGGGTGCGCTGGATGAGATAGACGGTGGACAGCAGCAGGCTAACCCCCAGAAGGAGGAGCGCCGCCAAATCCCAGAAACAGGCGGCGTGGACGGCGCAGAAAACGGCCGCAGCCGCCAGGGCGGTGAGGACGACAAAATCACAGGTTTTCACGGGCTTTTTCCTCCTCTCTGTCCAGTTGGCGCTTGCGCGTCAGGAGATAGGCCAGGGCAATTGCCATCAGCACCAGCGCGAGCCAGTGCACCCAACAATCCGCCGGCTGCCGGTGAGCGTGGCCGCTCAGTTCGCCGGTATAGGGCCCGCTGCCGGCAGAGTTCTGCCCGCTGTCGGCGCCGTCGGAGACGATGTCGCTTCCCTCCACCTGTCGCTCGGTGAGGG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCATGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 471171-470737 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWVY01000002.1 Bittarella massiliensis strain BIOML-A1 scaffold5_size597577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 471170 33 100.0 34 ................................. CTACGCTAATAATTCCCGCGACAGTGGCAACAGG 471103 33 100.0 34 ................................. CTACGCTAATAATTCCCGCGACAGTGGCAACAGG 471036 33 100.0 34 ................................. CTACGCTAATAATTCCCGCGACAGTGGCAACAGG 470969 33 100.0 32 ................................. ACAGGTCATTGAGCAGGAGCAGCAGGTCTTTG 470904 33 97.0 34 ................................T TTCTCTTCCATTTTCACTTCCTCCTAATAGGCGA 470837 33 97.0 34 ................................T AGGCAATTTTTAAGGACAAACGCTCGGCTTTCTG 470770 33 87.9 0 ..........A........T...A........T | C [470745] ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.4 34 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATC # Left flank : TCTCCATCGAGGGGGAGGGGGCGCTGGCCAAGTGTCTCTGCCATGAGCTGGACCACCTGGACGGGGTGGTCTTTTGGGAAAAGGCTATCTGTCAGGTCTTTCCCCAGGAACAAAGCCAATAGGACGGTTTGTGGCTGGGATGAAAGACAGCTGCAAAGGGAGGAGAGTAGATGAGGAGCCCCTTCTCTGACTTTTGGAGTGGACGCACAGGGCGCTCGTAGAAGGGGAGCTCTTTCGCGCCAGTTTCCCTCTTTCGAATTGACATACCCGATTTTGATTGGCTTTTTTGCGGCTCTTAAAATAGCGCAGTTTTACCCTCATTTTGGGGCGGTGCGAAGTCCAAGCGGACAGAAATTCCCCAGTGGGTTCGCACCGAGGAATTGCAAGATAAGTAGATAGAGTGGAAAAGAAGAGAAGACAGCTGCCAAAAAATTGACAAGTGTTTGTGGAGAAGGTATATTGAAAGCGCAAACAACAGTGTGCTTTTGTGTATGTTTGCT # Right flank : TTATCAGTGTTCAAACCCAAAATGACCTCACTGGTCATATCCCGTGCAGATGCACATATTGCCACTTCTCTGGTTTTTCCCACGGAGTTAGAGGTTGCGCTTACATGGTAGCCATGTGCCGTGCGGGAAGAAACGGCACAGCAGATGCAAATCGCGTATTTATAAAAGATCCCCCTTTACAGGTGCGCCAAGTCTGTGGTCACCATCAGAGAAATCCATTGGCAGACAAATGCGCCGATGAGAAAAAGGAGGCAGATGTGTGAAGAATAGAGGCTTCTTGCTGGTGAGGGCCATCCCCATTTCGTTCATCGTTCTGTTTTTGGCGAGGACAATGCTGAAAGCACAGAATGTTTCGAGCAGGATTGTGATCCTCCCCTTTTTGATTTGCGGCCTCACAGAGCTTTTGCGAACGATATTTTTGGCAGTGGGTTGGGAGAAGGCGGCAAAGCTGCTCTACAAGGTGTACGCCGCCAGCTTTTTGCTCTACGTGTTTGGTTTCC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //