Array 1 96055-94929 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONA01000008.1 Escherichia coli strain SC358 NODE_2_length_381242_cov_73.3421_ID_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96054 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95993 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95932 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95871 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95810 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95749 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95688 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95627 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95566 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95505 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95444 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95383 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95322 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95261 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95200 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95139 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95079 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95018 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94957 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113354-111556 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONA01000008.1 Escherichia coli strain SC358 NODE_2_length_381242_cov_73.3421_ID_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113353 29 100.0 32 ............................. GGTACGCTTCATCGCCCGACGTGGGGAGCATA 113292 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 113231 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 113170 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 113109 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 113048 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112987 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112926 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112865 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112804 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112743 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112682 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112621 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112560 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112499 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112438 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 112377 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 112316 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 112255 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112194 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112133 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112072 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112011 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111950 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111889 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111828 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111767 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111706 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111645 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111584 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //