Array 1 220661-221752 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SBIB01000010.1 Streptococcus agalactiae strain BJCH_SA2 Scaffold2_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    220661	    36	 100.0	    30	....................................	TCGTAAAATGATAAGTAATACAATAACACT	
    220727	    36	 100.0	    30	....................................	TTGGAAAGATGGCAGAGGGGTTAACGCAGC	
    220793	    36	 100.0	    30	....................................	TTTTGAGTTTTCAACTTATAGAGTGTATTT	
    220859	    36	 100.0	    30	....................................	ATCTGGAAGCGGTCAAGAAAGCCCAGTATG	
    220925	    36	 100.0	    30	....................................	ATGGTCAGAAATCGAAGAAAACGAAGTCGT	
    220991	    36	 100.0	    30	....................................	TAAGAATTTTAGATACTCTACTTGAATGCT	
    221057	    36	 100.0	    30	....................................	AAGACTTAAAATCGATTAGAATTGATTTTA	
    221123	    36	 100.0	    30	....................................	GCTTGGTCTCGAAGAATTACAGAAGAACAT	
    221189	    36	 100.0	    30	....................................	CAATTGATTGCCGTTAAAACCGATAGAGGA	
    221255	    36	 100.0	    30	....................................	TGAATTCCACGCCACCAAGTAAACCTGTGA	
    221321	    36	 100.0	    30	....................................	ACAAGAAACAAACAGCCTTGATGACTTAAT	
    221387	    36	 100.0	    30	....................................	GGGTCCAAATCAGCAATCTATGCTAAAAAT	
    221453	    36	 100.0	    30	....................................	CAACCCTATGTTTGATAATATTTTAGACGT	
    221519	    36	 100.0	    30	....................................	AAGTGAAGTTGAATTTTATTTGAGATACTA	
    221585	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
    221651	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
    221717	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA
# Right flank :  CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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