Array 1 21936-22566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWBK01000150.1 Shigella boydii strain 1146_SBOY 432_51066_1150915, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21936 28 100.0 32 ............................ GCCTGGTGGGCTTCCAGTTCGTCGGCCTCGAT 21996 28 100.0 32 ............................ CAGCTGGGCGGCGAAAACGTAAACATGATGCT 22056 28 100.0 32 ............................ GACGCCATTGCAACCGGCAGCGAACCGCCGTT 22116 28 100.0 32 ............................ ATGATTAAATCCAGATCGCCGGTATAGTCCAA 22176 28 100.0 32 ............................ CGGGCGTGTCGTGTGACCGACGACGCAATCGC 22236 28 92.9 32 CC.......................... AATCTGGATCGGAAATGGCGTCAGCGTGGTAA 22296 28 100.0 32 ............................ TCGGCGTGCCGGGTCTCGATTCCCTTGAGGTT 22356 28 100.0 32 ............................ ATCTGCTGGTATCGCGGGTCGTTTGGCCCTGG 22416 28 100.0 32 ............................ TGAATTTCGGTGGTATCGGTCATGATTTAATC 22476 28 100.0 32 ............................ AATACAACCTGGCGGGCAACTATCACACGGAT 22536 28 96.4 0 ....................A....... | A,A,G [22556,22559,22562] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGTTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCACCGTTTAATCGCTTCTAGCACTCGGCAACAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTCTTTTGCTCAGCTGGTTGAGCTGACAATCCAGGTCTTCTGTGGTGTCTATGCGTCTGAGAGAAACGGATGGTGATACCGAACAGGGAATCCAATAATTCCCCCCTAAAAATGCAGACACGCCACCTTACTCCGTTCTGGGTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTGTTTGGTACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCTTGGAAAAACGTGGTAGAACGTTGGTGTCGTCGGCATTGATCTGTATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGTCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCAGCGAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31042-32740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWBK01000150.1 Shigella boydii strain 1146_SBOY 432_51066_1150915, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31042 28 100.0 32 ............................ CGGGGTTTCGCGGCAAGTATGCACTGGACGGC 31102 28 100.0 32 ............................ TTGATAGGGCCGACACGACCGTCGACGCGAAC 31162 28 100.0 32 ............................ AGTGCAGCGCTCCGCAGCTAGGGCACGTCGCA 31222 28 100.0 32 ............................ ATGTCGGCGATGCCAACGAAAAGGCCGCAGAG 31282 28 100.0 33 ............................ TTGGTTCTCTTGATGAGGAAGTCATGCGCTTTA 31343 28 100.0 32 ............................ TTGCGCCTAACCACCTAACTGAGCATGCGAGG 31403 28 100.0 32 ............................ AGAAAGCCCCAGCGCATCGGCCACAGCGCCAT 31463 28 100.0 32 ............................ AGATAGGTGAGATGCCGGCGTTAACCGGCGAT 31523 28 100.0 32 ............................ GCCGTGAATCGCACCGCCCTCGGGTACACGTT 31583 28 100.0 32 ............................ GTCCCGCTCGGGTCGATTCGGCCGGTTTCTGC 31643 28 100.0 32 ............................ ATGTCGCCGTTGAGGCCCATCGCGGCGTCGGC 31703 28 100.0 32 ............................ ATCAATTCCTTCGATAGTGTCGGCGATCATGT 31763 28 100.0 32 ............................ CAAGTAATCAATATCCACAATTCGCTCTTGAA 31823 28 100.0 32 ............................ TCGACTATACGAACATAATCGACCCACGTATC 31883 28 100.0 32 ............................ TGAAATTCATCGCGCACCGCACGCGCAGTAAT 31943 28 100.0 32 ............................ CTGCGGTTGCCATGCTGGCAGACGCCGATCGC 32003 28 100.0 32 ............................ GAAAGGCAGGGGGAAGGGCAAAGGGCGACGGC 32063 28 100.0 32 ............................ GCAGAACAACGCCCAAACGCTGCAGGTAAAGC 32123 28 100.0 32 ............................ ATCGGCGCGTTGAAAGCCATGGGCGAAGAGGT 32183 28 100.0 32 ............................ AGACCCCTCATGCGTTCGGTTCGCAAATGCTC 32243 28 100.0 32 ............................ AGACTAACGACACCAGGCGCTTAATAATTTTT 32303 28 100.0 32 ............................ TCCGGCGCATCGAGCGTGATTTTGTCAGCCGT 32363 28 100.0 32 ............................ TGCAGGCGCTTTACATACTCGTCGGTTACTGT 32423 28 100.0 32 ............................ TATCCCCAACCCATCTAACCGAACATGCGAGA 32483 28 100.0 32 ............................ AATGCCACTACGTTAAGCCGGTCGGCGTCTAC 32543 28 100.0 32 ............................ GGCCACCAGTCCCGCCATCAGCTCGGAGAGAT 32603 28 100.0 22 ............................ AGCCACAGCACGCCAATCGTGA Deletion [32653] 32653 28 75.0 32 CGA...A.T....C.............G TTCTCATAAGAATACGTCTTCGCCTTACTAGT A [32658] 32714 27 75.0 0 ..GT.......C.C......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCCCGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGCTCATTAGTGATTTTTTTGTTCT # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCCGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAACGCCGTTGAGCGATCTCCCACCTGGCAGTGAAACGCCAGCGTTAATTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAGACGCAGCATGTAGAGGTACCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCTTACCGCTTTACCCCTGTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //