Array 1 4214-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKZ01000044.1 Actinomyces naeslundii strain R19039 R19039_contig047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4213 29 96.6 32 ............................C CGCCTGGTGGACGGTACGCAGGCACATTAACT 4152 29 100.0 32 ............................. AGGACCGCGGCCCGCCTATGCTCCTGCTCAGA 4091 29 96.6 32 ............................C TGCACATTGCGTAGTGACATGGTGAATATCCA 4030 29 96.6 33 ............................C GGGCCAGTCACATGCATCTCGCTGGACAGGAGG 3968 29 100.0 32 ............................. TATTCAAATAATGCCACATCTCGAAGCAGGAC 3907 29 96.6 32 ............................T GGCCTTGATCGCAACTTTCTTGTGCTGATCAT 3846 29 96.6 32 ............................C TTGCCGTAGAGAGAATTCAGGTGGAGTTTGGC 3785 29 96.6 32 ............................T GAGCCGTCAAACGCCAGGTTGTGGAAGTACGT 3724 29 96.6 33 ............................C CGTTACCACTGGACGGGACTGCCCGAGGAGATC 3662 29 100.0 32 ............................. GGGAGTACGCTCCGGAGGAGTACGGCCTCCGC 3601 29 96.6 32 ............................C AGCTGGAAGGGCGGCTATTTCCGCGGGATATC 3540 29 96.6 32 ............................C TGCTCACCTTTCTTGATCGCGTTCGAGATAGC 3479 29 100.0 32 ............................. GGTGTCACTGTCTGGCACTCACCGCCGCAGAA 3418 29 96.6 32 ............................T CGGAAACGCGTTATTGCGCACGATCAGGTAGT 3357 29 96.6 32 ............................C TTACCGGTACTGTCGTTGAGCGAACTAATCCA 3296 29 96.6 32 ............................C TAGGAGGAGATCATGGCGGGAATTTCCCACTA 3235 29 96.6 32 ............................T GTTGATAATCGCGTCGCGGTGGGCCTCGATCA 3174 29 96.6 32 ............................T AGGTGTGGAGGTAACGCCTCCCTGGACGGGGT 3113 29 96.6 32 ............................C CCGTACTTGGCGTTAATCCACTCACACGCATA 3052 29 96.6 32 ............................C TCACTTATTCCCCTTCTTCGGGCCGGGGCCCA 2991 29 100.0 32 ............................. TGCGTGTGTTCAACAACTTCTACCTGACTGTT 2930 29 100.0 32 ............................. TTCGCGTACCTTCAGGCGCCGGGCCGGCTGAA 2869 29 96.6 33 ............................C TGGTTGTAATAGGGCATGATCTCGTTCATCTTC 2807 29 96.6 32 ............................C TGTACTCTTCGTAGTGACATGGTGAATATTCA 2746 29 96.6 32 ............................C GGCCGCGTGAAGAGCGAGGTGCGCGAGTACCT 2685 29 96.6 32 ............................T GAGATCAATCTCCGTGGTCGTGTCAATCTCGG 2624 29 96.6 32 ............................C TCAGTGGGGTGGGCGGCACCCATCTTCTTGAT 2563 29 96.6 32 ............................C GGATGGTGTCAATGACGGCGGTGCGGATTCGC 2502 29 100.0 33 ............................. GCCGGTCATGATGGCCTCGAACTGGACCTCACC 2440 29 100.0 33 ............................. ACGACATCAGGATGGGTGACAGGGTATCCGACA 2378 29 100.0 32 ............................. AGACGCCATAGAGCCCGAGAAACCCTCCTGCG 2317 29 96.6 32 ............................T ATGCGATTCCAACTTCATGACGATGTTGTACA 2256 29 100.0 32 ............................. CCTGACGCCACATTGATGACGGGCGCGGAACT 2195 29 100.0 32 ............................. CCGACCGTTAATGCCGTTGTAGAAATCAAGGG 2134 29 96.6 32 ............................C TCGATCGGGATGCTCGCTGGTACCGCCTGGTG 2073 29 96.6 32 ............................A CAGGGGATGTTCTGGGAGCGGTACGGGTACGC 2012 29 96.6 32 ............................C TCGACGGAGACCCGCTCGGCCAAGCCATTGAA 1951 29 96.6 32 ............................T CGACTTGTTCACCTGAAGCGTCGGCTCCACGG 1890 29 96.6 32 ............................T CTTCTCCGCGGTCGCGTTCAGAAAGCGGGTCA 1829 29 100.0 32 ............................. GCCTTCTCCAGGTCCGTGCGGTCCTGGTAGGC 1768 29 96.6 32 ............................C TGGTCTATGGTCTCGTGCCCGATCTCGTTATA 1707 29 96.6 32 ............................T ACGCATGAAGGCACTCATCTCTGACCCCTTCG 1646 29 100.0 32 ............................. CAGAGTGAACTGCCGAAGCCACCCGAGCCGCC 1585 29 100.0 33 ............................. GGACCGTGGTCACGCTCCACGCCGCCACCGACC 1523 29 100.0 32 ............................. GCCGACCAGACGTTCGCGACGAAGGCGGACCT 1462 29 100.0 32 ............................. CCGTGGGACCCGATCGAGGCGACGCCGGTCTG 1401 29 96.6 32 ............................C GGGCCACCGGGTTGCGGGCAGTCGTCTGCGCC 1340 29 100.0 32 ............................. GACGGCCTCAGCCGTGACGAGTTCTTCGATCT 1279 29 100.0 32 ............................. TCCGCCCAGATGCCGGCTACGTTCAGGCCGGC 1218 29 96.6 32 ............................C ACATTCAACTACCTGATCGTGCGCAACAACGC 1157 29 96.6 32 ............................C AGCCTGTACGTGCCTGATGCCTCCACCGTGAA 1096 29 96.6 32 ............................T TCAACGCGGCGGTGATGGACCTTGGTATGACG 1035 29 100.0 32 ............................. TTTTTCCAGCAGTGGCCGCAGTTCGCGAGGGG 974 29 100.0 32 ............................. TCCGTGACGTTCGTGCCGAACCCAAGCTGCGG 913 29 96.6 32 ............................C TACTTTATGGGTCAGGTGTCGAGCGACATCAA 852 29 100.0 32 ............................. GCGCTTGTCCAGGCGGACAGCAGGTCATCCCC 791 29 96.6 32 ............................C ATCATCAAGTCAAAGGACACCAGCGGCGTTGA 730 29 96.6 32 ............................A TCGCTTCCAATAACTCAACACAAACCTTCTTG 669 29 96.6 32 ............................C TTCGGAAAGGCCGCCTGCCAGTTCTGCGAGTT 608 29 100.0 32 ............................. CGTGAGCAGGGCCTCATCGACGTAGGCCCCGC 547 29 100.0 32 ............................. ACTGACTTTCGTAAGCGAATCCTGGAGAGTCT 486 29 100.0 32 ............................. CCGGTCAAGAAGGAGATTTCAATCCAGATTCA 425 29 93.1 32 .......................A....T ATCGTCGAGCAGAGAAAGAATCCCTGCGTGCG 364 29 100.0 32 ............................. TGGACGGCTCACGAGGCCCGCGATGACGGTGC 303 29 100.0 32 ............................. CGCCTACGTCCCCGGCCGAGAGAACGAAGCAC 242 29 96.6 33 ............................C GACGACGGCGAGGTCGAGGTGATCGGCAAGAGC 180 29 93.1 32 .......................C....T GGACGTCAAAGGAGGCAGGCCGTAAGCGTTGA 119 29 75.9 0 ............G....TT...CA...TA | ========== ====== ====== ====== ============================= ================================= ================== 68 29 97.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCTGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : AGCGGACCTGGCTCGGACGACAGGTTCATGTATCTGGTGCGCCCGGTTCAGGACGAGCGCAAGGCCGCTGGCCTGCACGTGGGGGACCGGA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //