Array 1 17523-14851 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBM01000007.1 Vibrio cholerae strain OYP6D09 Vc_OYP6D09_Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17522 28 100.0 32 ............................ TTAAAGCCTTCGTGCCAGGTGCAGAAGGCGCA 17462 28 100.0 32 ............................ CGCTGTCCATGCCTGTTTGCCGTTAAGCTGGG 17402 28 100.0 32 ............................ ACCACCGCCAGCCGCTTTGTACTCGTCAAACG 17342 28 100.0 33 ............................ TTCCGGTACATAATCGGGCAGAGCCTTTTTAAT 17281 28 100.0 32 ............................ TGCTCGCATCACTCGCACACCTTTTCTGCCCG 17221 28 100.0 32 ............................ TCATCGCCCGCGCCGTAGTTCGCTAATGACTG 17161 28 100.0 32 ............................ GTTTTGCGTCATCGAGCTGTAGAAGGCTGATC 17101 28 100.0 32 ............................ TCAGCAAACCCTCAAGCGGTCGCAAAAGCGTA 17041 28 100.0 32 ............................ AAGCGCAGGCGGTCAATGCGCTGCTCAGTGGT 16981 28 100.0 32 ............................ ACTGGTGCAGCATTGTTGGTAAAGCCCGTTTC 16921 28 100.0 32 ............................ GACACCACTTTTCAAGCCCCAGCTCAGGACAA 16861 28 100.0 32 ............................ GCAACAATGGCCTCCGACATCAAACGGTAGTG 16801 28 100.0 32 ............................ TTTGGTCACGTTGCGGTTTATTGTTCCGTCGG 16741 28 100.0 32 ............................ AGCACAATAAAACTCACAATGCAAAATCCGAT 16681 28 100.0 32 ............................ AAAAGCACTGATTGAGCCGACAATGCCGACCT 16621 28 100.0 32 ............................ ACTCAGCAAAAAAGCTTACTGGCAGAGCAAGA 16561 28 100.0 32 ............................ TCCACCCAGAATCTACTTTTTTCACCCTGACC 16501 28 100.0 33 ............................ GTCTGAATTCTTTAGCAGGTAATCGAGCTTTGT 16440 28 100.0 32 ............................ CAAGACGATAATCTGGAACACGCATCAGGTGT 16380 28 100.0 32 ............................ ACTAACAATACTTTCTTCAAATACACGAGTTA 16320 28 100.0 32 ............................ TTTTTGGACAACAATTCTAGTTATTGTTTTAG 16260 28 100.0 32 ............................ CGTCAAAAAAGTGATTCTTGGCGCGGCTCTAA 16200 28 100.0 32 ............................ GCAGATTCCATTGCGCGGTCGATGCGCTCTTG 16140 28 100.0 32 ............................ ATTACCGCCGCCAGAGTCAGGAAGTGGTAAAT 16080 28 100.0 32 ............................ ATGATTCCTTGATACATGCGTACTTTGCCCAT 16020 28 100.0 32 ............................ ACCAGTACAGAGCGAAAGGCCGTCAGTGGTTC 15960 28 100.0 32 ............................ TTTGTCAGTATATGCTTTGCGTTTGGTCTGTA 15900 28 100.0 33 ............................ AGTATTGTAAAGAGGAGCAAACTTGACGTTAGT 15839 28 100.0 32 ............................ GTATTAGGTCTACCCTCTACATGACTGTATTT 15779 28 100.0 32 ............................ ATGATTCATCCCCATTGATTGTAAAACCACCA 15719 28 100.0 32 ............................ TTGACGTCAGGTTTGATAACACTGCTGATAGT 15659 28 100.0 32 ............................ TCAAAAGCATCCAGTAAATGACCAAGCTTACC 15599 28 100.0 32 ............................ TTCAAATGATTGACCTGTCCGTGTAATGAATC 15539 28 100.0 32 ............................ TGTCCTCATGGTTCGGGATGTAGTAGCCGTTT 15479 28 100.0 32 ............................ CTAGGTCGATATTCGCGGCGCGGTATTCCGAC 15419 28 100.0 32 ............................ ATCAATACCAACCCCATCTACGATAGTCCACT 15359 28 100.0 32 ............................ ACCAGCCCCAGCGCGTTAACAAGTGTATAGCG 15299 28 96.4 32 ...........G................ CAAAATAGCAGGAGGCTCTGCATTTATAAGGT 15239 28 96.4 32 ...........G................ TAAAGCGCACCATCGCGCTCTAGTTTTTCTCT 15179 28 96.4 32 ...........G................ TGAGTCTTTAGCGGGAGTGCCAGGCAAGAAAG 15119 28 100.0 32 ............................ TGGTGACTCAATGCCGTTATATAGAAAAAATC 15059 28 100.0 32 ............................ TTCAAGCAGTGGGATTTGTGTGCAGCGACACG 14999 28 100.0 32 ............................ GGTCTCTTTGAAGTCATTTGGTTGACCAGAGA 14939 28 100.0 32 ............................ ACGATAGTACCAAGGTCACGCATGTTGCTGTT 14879 28 92.9 0 ......................G.A... | T [14859] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTCGAATTTGGGGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTCAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCCTTATATATCTTATGGTTGAAGCTATCAAAGGTTGAGGGTTATATAAATGACAGTTTACTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAATTGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGATTGAAGCCCCTAAAGCGACGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCCGGCCTCGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCTGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGCCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51481-48032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEBM01000016.1 Vibrio cholerae strain OYP6D09 Vc_OYP6D09_Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51480 28 96.4 32 ...........C................ ATCATCACGAACTCTTGAGCGCACCAGTCAGG 51420 28 96.4 32 ...........C................ ACAAGTAAACACTGGCGTACATTGCAAGGGAT 51360 28 96.4 32 ...........C................ GAGTTGGGCGTAAATGCTGAGCCGAAATACTC 51300 28 96.4 32 ...........C................ ATTCTAGCTGCTGTTCTCTTTTTATCGTTCTA 51240 28 96.4 32 ...........C................ GTTCTTTGCTGGTGGCCTTTGATGGACTTAAA 51180 28 96.4 31 ...........C................ TTTGATATGTTCGGGTTCGAGGGCGTATCAC 51121 28 96.4 32 ...........C................ AGTAACCGCAAAAGCAAAGTTGAACTGCTGCC 51061 28 96.4 32 ...........C................ TTTAGGATTTTCTCCTCCAGTTCTGCCAATTG 51001 28 96.4 32 ...........C................ AACAGCCAGTTCGCAGATCATTGCTACGCCAT 50941 28 96.4 32 ...........C................ GTAAGCATCAAGGCACGAATCAATGATTGACT 50881 28 96.4 32 ...........C................ TATTAGCGGCTCGAATTCTATCCCATGCTCTT 50821 28 96.4 32 ...........C................ TTCCACAGGGTCAGTGGTTTCAAACTGGTAAA 50761 28 96.4 32 ...........C................ ATAGTAGGGGCTTATCCGCCTTGCGCCAGAAA 50701 28 96.4 32 ...........C................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 50641 28 96.4 32 ...........C................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 50581 28 96.4 32 ...........C................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 50521 28 96.4 32 ...........C................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 50461 28 96.4 32 ...........C................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 50401 28 96.4 32 ...........C................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 50341 28 96.4 32 ...........C................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 50281 28 96.4 32 ...........C................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 50221 28 96.4 32 ...........C................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 50161 28 100.0 32 ............................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 50101 28 100.0 32 ............................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 50041 28 100.0 32 ............................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 49981 28 100.0 32 ............................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 49921 28 100.0 32 ............................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 49861 28 100.0 32 ............................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 49801 28 100.0 32 ............................ GCTTAGTGGTCACGATTGACTCACCAGCCAGT 49741 28 100.0 32 ............................ CCAAGAACTCACGATTACAGCAATAAACACCA 49681 28 100.0 32 ............................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 49621 28 100.0 32 ............................ TCTTGAACGGTAGACGCTACCACGCGGCGTTT 49561 28 100.0 33 ............................ ACATAAGCGTAAGATCCTGCTGGGATGTTGAAT 49500 28 100.0 32 ............................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 49440 28 100.0 32 ............................ ATTGTAAGCATCGTCAGCCGTAAGCTTTACAA 49380 28 100.0 32 ............................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 49320 28 100.0 32 ............................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 49260 28 100.0 32 ............................ TATAAACGGACAGCAGATTTTTATGCTGAATA 49200 28 100.0 32 ............................ AAAATCGATGCGTCCCACCCACACCACCAAAA 49140 28 100.0 32 ............................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 49080 28 100.0 32 ............................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 49020 28 100.0 32 ............................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 48960 28 100.0 33 ............................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 48899 28 100.0 32 ............................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 48839 28 100.0 32 ............................ TAGGAGAATGACATGACATTAGGTACAGAATC 48779 28 100.0 32 ............................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 48719 28 100.0 32 ............................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 48659 28 100.0 32 ............................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 48599 28 100.0 32 ............................ TTTACCACTCGCAAAAAGATTCTGATTACCAA 48539 28 100.0 32 ............................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 48479 28 100.0 32 ............................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 48419 28 100.0 32 ............................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 48359 28 100.0 32 ............................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 48299 28 100.0 32 ............................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 48239 28 96.4 32 .................T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 48179 28 100.0 32 ............................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 48119 28 96.4 32 ...........C................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 48059 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //