Array 1 2-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVZ01000012.1 Salmonella enterica subsp. enterica serovar Derby strain 201506934 201506934_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 63 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 124 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 185 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 246 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : GTCTATAACCGTCGCCTCACGACTCGGCATGTGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2925885-2923903 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVZ01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 201506934 201506934_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2925884 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2925823 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2925762 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2925701 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2925640 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2925579 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2925518 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2925457 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2925396 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2925335 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2925274 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2925213 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2925152 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2925091 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2925030 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2924969 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2924908 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2924847 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2924786 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2924725 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2924664 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2924603 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2924542 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2924481 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2924420 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2924359 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2924298 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2924237 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2924176 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2924115 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2924054 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2923993 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2923932 29 96.6 0 A............................ | A [2923905] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2943821-2942143 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVZ01000011.1 Salmonella enterica subsp. enterica serovar Derby strain 201506934 201506934_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2943820 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2943759 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2943698 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2943637 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2943576 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2943515 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2943454 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2943393 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2943332 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2943271 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2943210 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2943149 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2943088 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2943026 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2942965 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2942904 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2942843 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2942782 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2942720 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2942659 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2942598 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2942536 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2942475 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2942414 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2942353 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2942292 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2942231 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2942170 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //