Array 1 3863-3162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYQ010000117.1 Escherichia coli strain 18-47-19 117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3862 29 100.0 32 ............................. GCACAGATGAGGCGAACAGGTCCGCAGAAACG 3801 29 100.0 32 ............................. GCGATCACCGGCGGCGATCTTGTGGAGATTGA 3740 29 100.0 32 ............................. CACATAGCCCGGCGCGATGGCCGATACATCAT 3679 29 96.6 32 ..............T.............. AAAGGGGCATGACAATAAAAACCCGTAACGCA 3618 29 100.0 32 ............................. CGCCGCGATAACATCATCAACTGCGGCGATTA 3557 29 100.0 32 ............................. AATCCGCCAACGGCGACAGGAGCTTGTGTCGC 3496 29 100.0 32 ............................. TACGCAATGTACACCGCGAATGGGTCATTTAC 3435 29 100.0 32 ............................. GTTGGTTTTCTTGGGATTTTTGGTCGGCACGA 3374 29 100.0 33 ............................. ATTTGTTTGATAGCTGCTGCGCACTGAGCCAGC 3312 29 100.0 32 ............................. AACGCGTGAACGCCTGGCGGGAGCGCCGCTAG 3251 29 100.0 32 ............................. TCAGGTAAGCCAGTGTTAGGGGCAATATAGCA 3190 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //