Array 1 3863-3162 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFMYQ010000117.1 Escherichia coli strain 18-47-19 117, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
      3862	    29	 100.0	    32	.............................	GCACAGATGAGGCGAACAGGTCCGCAGAAACG 	
      3801	    29	 100.0	    32	.............................	GCGATCACCGGCGGCGATCTTGTGGAGATTGA 	
      3740	    29	 100.0	    32	.............................	CACATAGCCCGGCGCGATGGCCGATACATCAT 	
      3679	    29	  96.6	    32	..............T..............	AAAGGGGCATGACAATAAAAACCCGTAACGCA 	
      3618	    29	 100.0	    32	.............................	CGCCGCGATAACATCATCAACTGCGGCGATTA 	
      3557	    29	 100.0	    32	.............................	AATCCGCCAACGGCGACAGGAGCTTGTGTCGC 	
      3496	    29	 100.0	    32	.............................	TACGCAATGTACACCGCGAATGGGTCATTTAC 	
      3435	    29	 100.0	    32	.............................	GTTGGTTTTCTTGGGATTTTTGGTCGGCACGA 	
      3374	    29	 100.0	    33	.............................	ATTTGTTTGATAGCTGCTGCGCACTGAGCCAGC	
      3312	    29	 100.0	    32	.............................	AACGCGTGAACGCCTGGCGGGAGCGCCGCTAG 	
      3251	    29	 100.0	    32	.............................	TCAGGTAAGCCAGTGTTAGGGGCAATATAGCA 	
      3190	    29	  96.6	     0	............................A	|                                	
==========	======	======	======	=============================	=================================	==================
        12	    29	  99.4	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG
# Right flank :  CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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