Array 1 51146-52331 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCZ01000022.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8188_R1 NODE_11_length_178466_cov_0.834325_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51146 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 51207 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 51268 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 51329 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 51390 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 51451 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 51512 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 51573 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 51634 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 51695 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 51756 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 51817 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 51878 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 51939 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 52000 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 52061 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 52122 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 52183 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 52244 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52304 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69001-70616 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCZ01000022.1 Salmonella enterica subsp. enterica serovar Newport strain R8_8188_R1 NODE_11_length_178466_cov_0.834325_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69001 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69062 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69123 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69184 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69245 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69306 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69367 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69428 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69489 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69550 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69611 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69672 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69733 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69794 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69855 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69916 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 69977 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 70038 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 70099 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 70160 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 70221 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 70282 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 70343 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 70404 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 70465 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 70526 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 70587 29 100.0 0 ............................. | A [70614] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //