Array 1 21665-20731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLF01000016.1 Thermodesulfobacterium commune DSM 2178 CC99DRAFT_scaffold00015.15_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 21664 35 100.0 40 ................................... TAACCTTTACTTCAACTTTTACTTTTTCCTTTTCCTTTTT 21589 35 100.0 41 ................................... TGATAGTCAAGGGGCTTCATGTCAATTGAAGCTACCAATGT 21513 35 100.0 42 ................................... TTATTGTCCTACTTACTTCTTGTTGATTTTGTTCGTCCATAA 21436 35 100.0 38 ................................... AAGGGGATTATAGAACTCAAAGTTTGAAGGATTGTATT 21363 35 100.0 40 ................................... TCCTCTTTTTCTTCTCCTAATCTTACCTCACCTGTCCATT 21288 35 100.0 39 ................................... CTATCACAAGGTATCCCATCATGCGGACAATGATCAATG 21214 35 100.0 37 ................................... AAATCGACTGTTACCTCAACTTTTACTCTTTCCATCG 21142 35 100.0 44 ................................... CCAACACTTCAAAGGCAGTGTTGCAATCAGTCTTCCCCTAAAAA 21063 35 100.0 42 ................................... CACCTCCCCCTCTTTTTCTATTTTATTTATCTTCTCTTCCAA 20986 35 100.0 44 ................................... CCATTGCCCCCATTCCAAACTCTTCCCACACACTCCCTCCCTGA 20907 35 100.0 36 ................................... TATAATACCTAAACCTCATCCTTCATCTCCTCCTTC 20836 35 100.0 36 ................................... ATGTCCTAGGTTTTCTCCCTTGGACGATTTGCCCAA 20765 35 94.3 0 ...............................G..T | ========== ====== ====== ====== =================================== ============================================ ================== 13 35 99.6 40 GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Left flank : AATTAAAAAGGTACTACAATTTTAGGCTTTTACAAGAAAAATCTAACTGAACTTAAAAATTTTGTCTTTTAAAGGGTTGTTTTATAAAAATTTTTATATATTATATAATTAATAAGTGGTTATTAGGTCTTTGACAAGAGAATAGGCTACGGGGCAGGGGTTGAAGTTAAGTTGTTAGTTTTTTAAGGAGATGGTATACCCTTTTCAAGGGTGTGTGTACATATATTTAGTAAATAAATGGATAATTTTTACCCCTCCCTACAAGCAAGATTTGATGCGACATAGAGAAGGGTATTTTTAGAGGTATTTTATTGAGTCTCATTTGCAATTAAATCTGCCCGAAAGTATCCTTGTAAGTTATTGATTTTATGTAGGAAATTTTTGTTATCCCAGGCTGTCAAGCATAGATTTCATCAGGGTTTCAAAGGGTCATTTTTAAAAATTTAGTTTTATACTAAACTTAAAAAAGTTAGATTTTATCAGGGTTTCAAGGGGTAAGA # Right flank : GTTAAAGGCTTGTGTCTGGATAAACAACCGTCCTAAACAATGGACTTAGAGAATGCCGCCTGTGGTTCTTGCAATTTATTTAATTTAGGCTATGATTATTTTTTAAATTCCTTTAAAGGTGAGGTAAATGAGCACAGGTAAAATAGTTAATCTGGAAAACAAAAATAAAACTGCCGAAGACTTTAAACTTTCTCCTTTAGAGGAAATCACCCTCAAAACCACCAAAGAAATCGTCATCAAGTTTATCGAAATGGGACGCTGCTCCCCTGCTACCTTTGAAGAGGTTTTCACCCAGGTCTTTTCTGTTATCAAAAAAACCCTCACCAAATAGATGCAACTTTTAGCCATCCACGCAAGCCCAAGAAGTCAGGGCAATTCTGAAATTTTCCTTGATGCCTTCCTCTCTACCCTTAATCACCAAAAGATAAAAACCGAAAAGATAAAACTTACGGAACTTAAATTCTCCCCTTGTGTTGAATGCGGAGGTTGTGAAAAAGACG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAACCTGCCCTACTTCAAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 33128-34559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQLF01000006.1 Thermodesulfobacterium commune DSM 2178 CC99DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 33128 30 100.0 38 .............................. CTCCTGTTTTTCCTGAGTATTCAGCTCTTATTGACCCG 33196 30 100.0 39 .............................. TCAAGAGACTTGTAATAATTGTCCATCTGGATATGTTTA 33265 30 100.0 36 .............................. GTGCTTGGTATGATGTTTTAGAGGTTTATGTAGATG 33331 30 100.0 38 .............................. TAAGCAATTTTCTCAACATCTTTTATCCCCACCTCCGT 33399 30 100.0 36 .............................. TTTCCAGCCTTTTCCCATCTATTTCGTCCTCAAAAA 33465 30 100.0 36 .............................. CAAACTACTACCTTCTCCCCCAAATAATTAAAATAA 33531 30 100.0 37 .............................. GAAGAAGAGGTAGCTCAAAAATTAGGTATTAAAAAAT 33598 30 100.0 38 .............................. GTTCAATACGACACATAGAAGGCTTGTGGGAACTATAC 33666 30 100.0 37 .............................. AGGAAAAAGAAGGATAATTCTTCGGTGGAAAAATAAC 33733 30 100.0 36 .............................. TGAATTTGTAATGAAAAGATGAAGCGAGATGTTTTT 33799 30 100.0 37 .............................. TGAGAACTGGAAATTATCAGTATTCAGTGCCTGAGAT 33866 30 100.0 37 .............................. ATCTATCTGTTTAGGTATCTGAAATTCAATCATTCCG 33933 30 100.0 37 .............................. TTTACCATGAAGGACCCCAAGGATCATACGTGCATAA 34000 30 96.7 36 ................T............. ATGAGTCTCTTGACATTTTCTAAAAATATGTTAAAA 34066 30 96.7 37 ................T............. ACTGTTTAAATTTCTTGCTTGCCTCTTGACTATATTG 34133 30 96.7 37 ................T............. CCCTCAGGTAATCTTGTCCTGAGAACAAAGTGTATGG 34200 30 96.7 36 ................T............. GTTTCACCGTTCAATTCTTGCAAAAATATGTTAAAA 34266 30 96.7 35 ................T............. GTTTCACCGTTCAATTCTTGCATATATCTAATTAG 34331 30 96.7 37 ................T............. GAAGATAGCCCAGACCCAGAGCATCCACAGTGCATAA 34398 30 96.7 36 ................T............. ATGAGTCTCTTGACATTTTCTAAAAATATGTTAAAA 34464 30 96.7 36 ................T............. ATATTAATATACACAACACGTTGCCCTGCTTTATCA 34530 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 98.7 37 GTTTTGAGCCTACCTACAAGGAATTGAAAC # Left flank : TTAGAGTTGTATAAGATTGAAAAACACTTAATGGGAGACGAAGAATATAAACCTTTTATAAGTGAATGGTAGGCAATGTATGTGATTTTAGTGTATGATATTAATGAAAAAAGAGTGCAAAAAGTGTTAAAGATTTGTAGAAAATTTTTGCATTGGGTACAAAATTCAGTTTTTGAAGGAGAGATTACAGAAGCAAAACTTTTCAAGCTAAAACAGCAGCTTAACCATGTTATAGATCCTGAAGAAGATTCGGTGGTTATATATACGTTTTTAACTGAGAAGTATTCAAGAAGGGAGATTTTAGGAAAGAACAAAGCGGTTACGGATGTGATTATATAAAATTTCTGTCGATCTTAGATAATGTAAAAGTTCTTGGGGATAGACGAAGGGCAAGATATTAGATTAAATCTTGACAAGCTGGATTTTGGAGTGGTAATTTTTTAAAAAAAGGAATTAGTTCTTTGACAATTGAATAATAGATTTTATAATATTTTAAATGG # Right flank : CATTACTCCTTATTTGCCCTTACATGCTTACAGAAGGCTCGATAATTGAAGGAGACTTTTGGCCTGAGCCTGTTGAAGTCAAAAGAGTAGAAGAGGTAGAGGATGGATACCGCATCGTTGGTTCAACGATAATTTCCCGTCAGCATGTAGATGATTTCATCGCCTTTTCAGACCTTCCAAAGATAAAAACTAAAGAATTCTTGTTAAGTTTTACTCAACCGGGCTCTGAAGCCTTTTTAGCCCTTGAGGCTCTTCGGTTTAGGTATGCTTCCCTTTTTGACCCCTTGCTTGCTGTAAACGTCTCCAAAGTCGAGCCCCTACCCTTTCAGATTGAAGCTGTCTATGGCTATATCCTAAAGCTTCCTCATATAAGGTTTCTTCTTGCTGACGACCCCGGGGCAGGAAAGACTATCATGGCTGGTCTTGTGATAAAAGAGTTAAAGCTTAGAGGGCTTGCTAGGCGAATCCTCATCGTTGTCCCAGGTCATCTAAAAGATCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAGCCTACCTACAAGGAATTGAAAC # Alternate repeat : GTTTTGAGCCTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //