Array 1 223347-224291 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQF01000002.1 Escherichia coli strain 5902 5902_NODE_2_length_340201_cov_60.6616_ID_3537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223347 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 223408 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 223469 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 223530 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 223591 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 223652 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 223713 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 223774 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 223835 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 223896 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 223957 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 224019 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 224080 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 224141 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 224202 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 224263 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249841-251028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQF01000002.1 Escherichia coli strain 5902 5902_NODE_2_length_340201_cov_60.6616_ID_3537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249841 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 249902 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 249963 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 250024 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 250085 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 250146 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 250207 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 250268 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 250329 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 250390 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 250451 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 250512 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 250573 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 250634 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 250695 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 250756 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 250817 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 250878 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 250939 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 251000 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //