Array 1 24625-23269 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUY01000105.1 Neisseria meningitidis NM3164 gnm3164.contig.104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24624 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 24558 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 24492 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 24426 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 24360 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 24294 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 24228 36 100.0 30 .................................... GCCTCACAAATATCGTCAATGCTTGCGCGA 24162 36 100.0 30 .................................... TGCCACTTGATGTTTTAGCCATAGTGTTCT 24096 36 100.0 30 .................................... TGCGAAGCGAACACCCTGAACAATGCCGAC 24030 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 23964 36 100.0 30 .................................... CATGCCGTCGGGCGGTGTTGTAAATTTTAA 23898 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 23832 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 23766 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 23700 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 23634 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 23568 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 23502 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 23436 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 23370 36 100.0 30 .................................... TGCTAAGGTTTAATTGGCATTTTCTTTTAA 23304 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GAAACGGTCGATGTGTTTGGCAATCATGGCTTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //