Array 1 43816-45125 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYO01000016.1 Escherichia coli strain HH16C NODE_16_length_111317_cov_177.394211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43816 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 43877 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 43938 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 43999 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 44060 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 44121 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 44182 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44243 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44304 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44365 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 44426 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 44487 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 44548 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44609 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44670 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44731 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44792 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 44853 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 44914 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 44975 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45036 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45097 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70825-71889 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYO01000016.1 Escherichia coli strain HH16C NODE_16_length_111317_cov_177.394211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70825 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 70886 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 70947 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 71008 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 71069 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 71130 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 71191 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 71252 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 71313 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 71374 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 71435 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 71496 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 71557 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 71617 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 71678 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 71739 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 71800 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 71861 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //