Array 1 45116-47251 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVV01000004.1 Ligilactobacillus salivarius strain FCQNA25M6 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 45116 36 100.0 30 .................................... CAAACCAAAGCTAACAATCACTAGCGTTAA 45182 36 100.0 31 .................................... ATACCTGTGTGGCAGTAGTTCCACCAGACGA 45249 36 100.0 30 .................................... TGCCGACAATATGAGTAACCCCTATAGCCC 45315 36 94.4 31 ............G...............C....... ATACCTGTGTGGCAGTAGTTCCACCAGACGA 45382 36 100.0 30 .................................... TGCCGACAATTTGAGTAACCCCTATAGCCC 45448 36 100.0 30 .................................... TGCCGACAATATGAGTAACCCCTATAGCCC 45514 36 97.2 30 ..................G................. CAGCTATGACCGTAAGTTACTAATTCCTGC 45580 36 100.0 30 .................................... CAGCTATGACCGTAAGTTACTAATTCCTGC 45646 36 100.0 30 .................................... CGTTTGCTAAAGAATGCAGCAACAGAAGAA 45712 36 100.0 30 .................................... CAAAGGGGAAAGCACTCTTGCTGGTGGATC 45778 36 100.0 30 .................................... GTAAGGCTAATAACGAACTAAACGCACCTT 45844 36 97.2 30 ......................C............. CAAAGGGGAAAGCACTCTTGCTGGTGGATC 45910 36 100.0 30 .................................... GTAAGTCTAATAACGAACTAAACGCAACTT 45976 36 100.0 30 .................................... GTAAGTCTAATAACGAACTAAACGCACCTT 46042 36 97.2 30 ...................A................ ATATTTTTACTTGAGTTGCGAAGGATTGCA 46108 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 46174 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 46240 36 100.0 30 .................................... TAGACTTTTGAGAACCATTCTCGACCATGA 46306 36 97.2 30 ..................C................. AAACACTCCAAGTGTTCAAGCAGCTAGAGG 46372 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 46438 36 100.0 30 .................................... AGATGTTTTAACGTTTATCAACTACAACAG 46504 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 46570 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 46636 36 100.0 30 .................................... AGCACGTTTGAACAAGTACGCTAAGCAACG 46702 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 46768 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 46834 36 83.3 30 ..........T.........T...A......G.CT. GATTAACAATGCCCTTAATCTAAAGGACCG 46900 36 86.1 29 ..........T.........T...A......G.T.. AATCCGAATCGCTTTCTCTCCTCGGTTGA C [46933] 46966 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [46999] 47032 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 47150 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 47216 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 32 36 96.8 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : TAACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAAC # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //