Array 1 492466-497378 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134394.1 Listeria ivanovii subsp. londoniensis strain NCTC12701 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 492466 36 100.0 30 .................................... CTCAAATTTAGAATTACCAGCAATGTTATC 492532 36 100.0 30 .................................... ATCCCGCGCATTATACGAGCGGTGGCATTG 492598 36 100.0 30 .................................... TGATTGGGAGGGAACCAGTTATGAGCACTG 492664 36 100.0 30 .................................... ATATTTGATAATTCATGAAGACCTTCCTCC 492730 36 100.0 30 .................................... AAATTGGAAACGAAATTACAGAAGAAGCGG 492796 36 100.0 30 .................................... CGAAAACAGTTGGGCAGTATACAAACGTCA 492862 36 100.0 30 .................................... AAGTTTTTCTCTGGGTTTTCTAATTTTGCT 492928 36 100.0 30 .................................... GGATTTGGGGAAATATATTTTAATTAACTA 492994 36 100.0 30 .................................... ATGTCACTTATTTGTATGGAGCAAACTCTC 493060 36 100.0 30 .................................... GAATGTCCCCTTCACTACCGCCATCACCCA 493126 36 100.0 30 .................................... ATTTAAGACGGATATTATACCACCGAGCGG 493192 36 100.0 28 .................................... TTAGGCGGAAAACAAGATAATGCGATTA 493256 36 100.0 30 .................................... TAGAGGTAAGTTGCATGAGACGATTCGCAC 493322 36 100.0 30 .................................... ACCTAAAGGGCATGGACGACCAACAAAAGG 493388 36 100.0 30 .................................... TCTTTTTATCTGTTTTGTCAATAATTAAGC 493454 36 100.0 30 .................................... AATACACTTTTATTAACCAGCTTTTTACAA 493520 36 100.0 30 .................................... TGCCTAAACGAATAGATAATACCGTTGCCG 493586 36 100.0 30 .................................... GGAATCAATACTTGCTCCGCCAAAAATCGT 493652 36 100.0 30 .................................... AAGAAGAAACGCTAGACGACACGCCACATA 493718 36 100.0 30 .................................... GAAAAATCATTCTTTTCAATTGCTTTACCA 493784 36 100.0 29 .................................... TAAAGCAGATGAACACATGGCAAGCTATC 493849 36 100.0 30 .................................... TTATAGTTTAGGTTTTGCCTTTGGAACCAG 493915 36 100.0 30 .................................... TTTTGAAATTGTAGAAGGGCGAGTGGGAAA 493981 36 100.0 30 .................................... AAAGTTATCGGCTGCATTCATAACCTCGCG 494047 36 100.0 30 .................................... CATTTTTTGCGGGGGTATTTTTTAGGAGGT 494113 36 100.0 30 .................................... CACTTGTTTCTGTGAAGTGATCATACGCAA 494179 36 100.0 30 .................................... GATTGCCGAAACAATGCCTCAAAGCGGTGG 494245 36 100.0 30 .................................... ACAGTATCGAGCGTTTAGACGTGAAATAGA 494311 36 100.0 30 .................................... TTCACAGAGAGGTTATAATCCTTTTGAAAT 494377 36 100.0 30 .................................... ATTGCATTTGTTGATAATTTGCCATGGAAG 494443 36 100.0 29 .................................... AAAGTACTGTTTGGACTTGAAAATGTACA 494508 36 100.0 30 .................................... GGGAAGTTTATAGAAAAACGTACAAACCAT 494574 36 100.0 30 .................................... AAAAACTTGGCGGAGATTTTGGCGCAGGAT 494640 36 100.0 30 .................................... TAGACCCGACAACAAAAGGGATTAGCGACA 494706 36 100.0 30 .................................... ATAGTGTTGATGGCACAATGAAATCAGCTT 494772 36 100.0 30 .................................... CAAAGTAGGCGGAGACATATACATTAATTG 494838 36 100.0 30 .................................... TTAAATCAACGTTACTTTCAATAGCATCCA 494904 36 100.0 29 .................................... ATGGATGAATGCGTTTGGTCTACGGTTTT 494969 36 100.0 30 .................................... AATAACTATCCGCTAACTCTGAATCTTCTT 495035 36 100.0 30 .................................... ATGAAAACAATTTCATTTGTTTAAGAGCAA 495101 36 100.0 30 .................................... TTATCTTTGTTAAACGCATCTTTAATAGCG 495167 36 100.0 29 .................................... GATTTGGGGAAATATATTTTAATTAACTA 495232 36 100.0 30 .................................... ATCGCATATGACCAAACACCAACAATTACT 495298 36 100.0 30 .................................... CTTTACGGTCAATACCAACGCCACTCGGAT 495364 36 100.0 30 .................................... CACTCCGGGGAGGTTTAGAAACAGGCGCTA 495430 36 100.0 30 .................................... TCCAAAGTAGGGCAGGATAACATCACTACT 495496 36 100.0 30 .................................... AGTCGAAGGTCGGAGTAATCGGAGGTATGT 495562 36 100.0 30 .................................... ATTTAGCCCGTTTGTTGACGCCCTTTGTTG 495628 36 100.0 30 .................................... CGAGAACATTAATAAAATTAAGAGTGCTAT 495694 36 100.0 30 .................................... AATGCGTCGTATCGAAGGTTACCGCTTGAG 495760 36 100.0 30 .................................... ATATACGACGAAAATCAAGACTATCAAGAG 495826 36 100.0 30 .................................... GAAATCTCGCTCTTGTGTATTTAGCACAGT 495892 36 100.0 30 .................................... TGTTGATGTTATCCCTGTTAGTAGAATAGG 495958 36 100.0 30 .................................... AATTAATTAACTTACTCTCATCTTCTACAA 496024 36 100.0 30 .................................... GAAACAGCTTGACAATAATGAAAATGTGTT 496090 36 100.0 30 .................................... GTTATAAAGGTTCTTTCAAACAAGAGAACA 496156 36 100.0 30 .................................... AGTTATTTTGTCTACACCGGACGGTACAGT 496222 36 100.0 30 .................................... GTTAGGGTATACTGTGCAAGTATTTTTATT 496288 36 100.0 30 .................................... ATTGTTTGTCAACAAGATTACTTCCATATT 496354 36 100.0 29 .................................... AAAATTGATACAAGACCGGACTTATGGTT 496419 36 100.0 30 .................................... TTCGTTTTCACGACTTACGGCACACTTCTG 496485 36 100.0 30 .................................... TAGGTGTGCCTTTCTCGTTGTAGCCTACAG 496551 36 100.0 30 .................................... CAAAAGAACCTAAATGATATTCTTTTCCGG 496617 36 100.0 30 .................................... TAGAAATAACAGATGTGATCGCAACAGCGT 496683 36 100.0 30 .................................... ATTTATTGTTTTTGTGGAAACTATTAGCAA 496749 36 100.0 30 .................................... GAAATGCTTTACAATATCCAGTCTCATGCT 496815 36 100.0 30 .................................... CGGCTCGCCTTTTATTAATCGTAGTTCCTG 496881 36 100.0 30 .................................... AGGTGGTTCAATTAGTGAAGAGTAACCAGC 496947 36 100.0 30 .................................... AAAAGACTTTTTATCTAAATCATTAAATAT 497013 36 100.0 30 .................................... TAAAGATAATCGCATGTTGCAACTTGCAAA 497079 36 100.0 30 .................................... TGCCGTTTCGACTTCTTCCAAGCTAGCTTC 497145 36 100.0 30 .................................... GAAATATCAGCAATCAAGTGGAACAAAGAG 497211 36 100.0 30 .................................... TTATATGATTGATGCGTTGATACCACCTAT 497277 36 100.0 30 .................................... ATTTTATCTGGGAGAAAATAAACAATGACG 497343 36 80.6 0 ..................ACA...AC.....A...A | ========== ====== ====== ====== ==================================== ============================== ================== 75 36 99.7 30 ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Left flank : TAATCTATATGCAAAAGAATTATTTAATAAGCAAGTTTTATTTTTTATAGAAATGCCAGAAAAAACCATAATTTCAGAAGAGGGAATAAAGAAATTTCAATTACATGTTGAAAAAATGTTAACAAGAGGAATCAATGTATTTATTATTTCTGAGCATATTTGGATGGATGGTGTAACTAACCATTTTTATTTTAATGATGTTGTGAATGAATTACAAATTTTGGCGAAAAAAGAACAAATTTTTGAAAGAATACCTTTATTTGTAGAAGAATCGGATTGGATAAAAGCAATAAATTGGTCTATGTTAGCTGTGGATAACTATGGTGGAAAAATGGTCGAATTAAAGTTGGAAGCTGTGGATAACTTAGTTGTATTTGTATTAGTTTATTTTATTTTCATTTATAATGAATGGCGAATTATCGTTGACTACAAAGGAATTCCCGCAAATATTATTGTTTACCTTGATAGGTTGATTTAGGTTGAGGTATAATGGAAAAGAC # Right flank : ATTCGGTAGAATCACCGCGAACCAATTCGGTTAAACAAATGTGAATGGAGCTAATTGATTTTGGAATCATAGAAAAGTTGTAGCGGATAACAAAAAAGATATCTATTAATTGGCGAAAGTAGACAAAGTTTATTCAAAACAAACCTATATCACGGAAAACTAGCATCCGGAAGCAAGTTAAATGAGCGGAACTAACACTCAGGTGGAATAAAGATTATGAAAAGAAAGAATAACATTTGAATTAAATATAGATTATGTTTAAAATCATCAGCCCACAAAATCAATACAAATGTGTCCCTCTAGAGTCAATAATCATCTCTAGAGGGATTTTTAGCCAGAGAATTAAACCTCCTTGTCGTTTTCATCACAATCTAATGACTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2766937-2766109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134394.1 Listeria ivanovii subsp. londoniensis strain NCTC12701 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2766936 36 100.0 30 .................................... TCATTGACGAATGACACCGTAGAAGTTTAC 2766870 36 100.0 30 .................................... GAAACGTGTCGTTGCTATTGCGAAATCGGT 2766804 36 100.0 30 .................................... TATCCTATTCCTTCCAGCAAAAAATAACAA 2766738 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 2766672 36 100.0 30 .................................... TTCCGTTTTTGCGCCCGGTGCATTTACCGA 2766606 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 2766540 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 2766474 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 2766408 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 2766342 36 100.0 30 .................................... AGAAAATAAGGCTTTTATGAAAATGCTCGG 2766276 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 2766210 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 2766144 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : AAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAATAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //