Array 1 532114-528664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068109.1 Moraxella osloensis strain FDAARGOS_1130 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 532113 28 100.0 32 ............................ ATCATTATAAGGATTGGTGAAATGAAAATGAA 532053 28 100.0 32 ............................ AGCCGCCATCATAAAGAGCGTTTGCGCCTTTT 531993 28 100.0 32 ............................ AACGGCAACAAACTAGGCTAGGCGATTATGTT 531933 28 100.0 32 ............................ CCACACGGGTGCGTGGATTGAAACACTGTGTC 531873 28 100.0 32 ............................ AAGACGGCAACCCCAAAATTTTGGGCGTTGTT 531813 28 100.0 32 ............................ CAGTATTTAGCCCGCTGCTCGTAGTCCTTGGC 531753 28 100.0 32 ............................ ACGCCCGCCAAGTATGGGCGCAATGGTTTTAT 531693 28 100.0 32 ............................ AAAGGCTATCAAGGCGTCAATGCTGCAACGAA 531633 28 100.0 32 ............................ CAACATACCAAGAGTTTGTTAAAAAAGCCGAT 531573 28 100.0 32 ............................ ATTATGCCTAACGCCGTCATTGCCTCTGACTT 531513 28 100.0 32 ............................ TATCAAAACTCACAGGCGCAAGCGGTACAGAA 531453 28 100.0 32 ............................ AGTGAGCGCGGATTGGCTTTTTTGCAGTTTGT 531393 28 100.0 32 ............................ CAAACTACCGCTCAGATTGTTACCGACAAGAT 531333 28 100.0 32 ............................ ATTCTTTATAGGTATCACCAGCAGCCAAACAA 531273 28 100.0 32 ............................ TTCATTCTCTCGAAACGTTTTGACATGGGGTT 531213 28 100.0 32 ............................ CATAAAAAAAGTGGGTTAAACTGCTTCTGAAT 531153 28 100.0 32 ............................ AATCAGGCAAAACCTCAGGCGGTTCAACCTCA 531093 28 100.0 32 ............................ CGGAACGTAAAATATGATATTGTTTTATATGA 531033 28 100.0 32 ............................ AACGAGGGGATTATTTGATGAACAAACTATCT 530973 28 100.0 32 ............................ AACAACGGTATTCGCCTTCCTTACCACACCAC 530913 28 100.0 32 ............................ TGTATAGATTGCGATGATGATATTCCAGTAGA 530853 28 100.0 32 ............................ AATCGTAAAAGTGTTTGACGAGTTTAAAATAC 530793 28 100.0 32 ............................ CCAGCGATTGCACCGCCAACGATACCTTTAGC 530733 28 100.0 32 ............................ AACAACAACAGCAAATTGAGCAACTGCAAGCG 530673 28 100.0 32 ............................ ATCAGGACAGGTTCGCCAGTCGTATACGTTTG 530613 28 100.0 32 ............................ TTAGTCGCGCTCAGTCAGTCGCTATTTGCCAA 530553 28 100.0 32 ............................ CAGTATAGTCAATCCTTGGGTAGGTACAGTAA 530493 28 100.0 32 ............................ TAGATAACCTATGAGCAGTTAAAAAAAGTAGG 530433 28 100.0 32 ............................ ACTGTCTCTGCCAAGAGTCTAATGCTGGCAAA 530373 28 100.0 32 ............................ CGACAGTGCGTGTTTTTTATGCCTAAAATTTA 530313 28 100.0 33 ............................ CCAACCCCCTAGCTAGGAGTTATTTATGGCAAC 530252 28 100.0 32 ............................ CCGCCAAACTTGCCGCCTTTACGGTTTTGCAG 530192 28 100.0 33 ............................ ACCAAGAAAAACACCGTCAACGGCAATGAAACC 530131 28 100.0 32 ............................ CACATCAATGCTAACTTTATACTTGCCGTGCG 530071 28 100.0 32 ............................ TTAGTGGGTTTTAACCTTCTAACATCCACGAT 530011 28 100.0 32 ............................ CGTGAAATATCTTTTGCTAGGGCTGCTATTAA 529951 28 100.0 32 ............................ TGTTCACGCTCACTAGCACCAGGCGCAATACC 529891 28 100.0 32 ............................ ACAACTGTTTGCATACCGCTTTGAGCTTGAGC 529831 28 100.0 32 ............................ GCCTGCAAGTATTTTTAAATTGTACAAGTCAA 529771 28 100.0 32 ............................ AAGGCTGTTTACCAGCCCAAAGTGACAAAACT 529711 28 100.0 32 ............................ TACTAACACAATACCGACAGCAAAAACAGCTA 529651 28 100.0 32 ............................ GCAAAAATCTCGAGAAAGAGGTTGGGCAGACA 529591 28 100.0 32 ............................ TGTCTCTGCGCCAAGCTTTCCCGATTCGCTAA 529531 28 100.0 32 ............................ AACGAGGGGATTATTTGATGAACAAACTATCT 529471 28 100.0 32 ............................ AACAACGGTATTCGCCTTCCTTACCACACCAC 529411 28 100.0 32 ............................ TGTATAGATTGCGATGATGATATTCCAGTAGA 529351 28 100.0 32 ............................ TTGCAAACAATGAAAACTTAGTTGAGAAAGTA 529291 28 100.0 32 ............................ AGCAAGCAGCCCAGCCCCTATACAAACACAGG 529231 28 100.0 32 ............................ ATAATGCTTGCAGTGATGTACCGTTACGGGCT 529171 28 100.0 32 ............................ ACTATCAAGGCTAGTCCTGCAAAAATTTTGCA 529111 28 100.0 32 ............................ CTATTATTGACAGTCGAGCTGTGTCTATTAAT 529051 28 100.0 32 ............................ TTGTCGCCAACGCCGCGAACATCAGCACCAAC 528991 28 96.4 32 ................T........... AAAAGCCGCCTCGCCCTCGGCTAAATCAAAAG 528931 28 100.0 32 ............................ ACACCGACGCCTGTCATAGCGATAATCTTAAA 528871 28 100.0 32 ............................ AGTAAAAACGCGCCTTGCATGACGTTGTTATC 528811 28 100.0 32 ............................ GTAATGAGCCTTATCACGCACAGGATTAAAAA 528751 28 100.0 32 ............................ CCAGCCGTCAACTTCTTTGGCATATTCAATTT 528691 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : CTTTCTTTCCTGCGTCATAGCCTTTGTGTTTGGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTTGCGTTTGTCCTTCTTTCGCGCTTTTTTGACCAATTTTTTTTAAGGCTTGGTCAAGAATGCTGTTGCCTTCTTCATCAAGCTCGCTCCATTTCTGAAAGTATGAGTGGACGGTGCGCCATTTGGGAAAGTCATGGGGCAGCTGTCGCCATTGGCAACCTGTTCTTAGTACATACAATAACCCACAAAATACGTCGTAAAGGTCAACCGTTCTTGGTTTGGTCTTCTTCCTTGCACTTTCTAAAATCGGTAGTATGTGCTCAAATTGTTTTCGGCTAATGTCGCTTGGATAGGCTTTTCTCATGGTGATTGATTCGGTTATTAATTGATTATGTAGCTTATCCTAGCATATTTTTTAATCGTGAACAGGTTCTTAGAAATAACTAAATGCTCACTTATTGATGTACTTGTA # Right flank : CATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAATTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTATAGTTAAAACCGAATTATACCAAGCAACTTTCAACACAATCCTTAAGCGTATCAAAATTGCTTAGCGTTAAACGAACCTTTTGCTTAATCACTGCCCACAACTGCTCAATTGGATTGAGTTCAGGTGAGTAAGGCGGTAAGTACGTCAGTTCAATATTATAAAGTTCCGCAATTTGCTTTAAATCGCCACCATGATGAAATCTGGCATTATCCAACACCAATACACGTTTTGGATAATTGCCCTTATCATCTTTTGGCAAAGATTGCCCCAACGTGTGTAGCCAGTTTTCAACCGTCACTCGTTTACAACCACCTTCAAAGGTAACAGGAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 536300-533022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068109.1 Moraxella osloensis strain FDAARGOS_1130 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 536299 28 100.0 32 ............................ AATGGCGATGCTAAATATGATTTGATGGATTT 536239 28 100.0 32 ............................ AACATCAGCGTCATCGGTCTAATCGCCACGTC 536179 28 100.0 32 ............................ CACACCAATACGCCATCACTATCAATCAATCC 536119 28 100.0 32 ............................ ATAACAATGCTAATGCCATGGTCAAGGTGGCA 536059 28 100.0 32 ............................ AACCACTATCGTGCAAAACACTGACACGGAAA 535999 28 100.0 32 ............................ CTTAGAAGTCCCCAGCTTTTTTATAGGGCTGT 535939 28 100.0 32 ............................ TAAACATGGCAATGCCACATAACCCAGCATAA 535879 28 100.0 32 ............................ CTTGCCCATGCAGATGATAGCGTTACAGGTTT 535819 28 100.0 32 ............................ TTTTGCAAGTTAGGAAAGCCAAAGGCAAGCCA 535759 28 100.0 32 ............................ TGTGTTATCGACCGCAAATACCATGCTGTCTT 535699 28 100.0 32 ............................ TACACGGGTGTTGACAGCCGTCACTTTGCACA 535639 28 100.0 32 ............................ AGGTAAACCAAATTCAATATCTACATTGGCAG 535579 28 100.0 32 ............................ TTGCGGAAAACCATGCCAATAATTACGCCTAC 535519 28 100.0 32 ............................ AACATTAATAATCTAAAAATTGACTATGTACG 535459 28 100.0 32 ............................ TTGAACAAGCCAACTAGCATAAGTATGGCGCA 535399 28 100.0 32 ............................ AAACCAGTAATGTTTGCAACATCTAAACCAGT 535339 28 100.0 32 ............................ TTCAACCACGTAACAAGCACGTAGCTCACCGC 535279 28 100.0 32 ............................ TATATAGTGGGCATACCATACTATCATCAAAT 535219 28 100.0 32 ............................ GACAGCCAGCGTCTCATTGACAATCTCGTCAA 535159 28 100.0 32 ............................ TATCCCCAGTGATAAGATTTTTTTCGGTAAGC 535099 28 100.0 32 ............................ GAGCCAATAGGTGGCAAGAAGTAGCCTTCTGG 535039 28 100.0 32 ............................ AAATAGCGAACCAAGTAGCAAAGACGGGCAAC 534979 28 100.0 32 ............................ AGAAGAAGAACCTATGAAACCAGTTAAAAATG 534919 28 100.0 32 ............................ AGCAGTGTCAACAGTTTTGCCAGCTTCGGCTA 534859 28 100.0 32 ............................ CACGAGCGGTCAAGAAATGATTAAATTCTTTA 534799 28 100.0 32 ............................ GATGCTGTTTCAACAGTGCGGCTCACGATGTC 534739 28 100.0 32 ............................ TGGCTGAGTGGTACTAGCACCTGGCAAGGTAG 534679 28 100.0 32 ............................ TGTATCAATCTAAAACACAAGGAAACAGTACA 534619 28 100.0 32 ............................ TATTTTGCCTAGTGTGATTAAGCGCCCATCTT 534559 28 100.0 32 ............................ ATAAAATCGGCAAGTGCGAGCAACAGATAAAT 534499 28 100.0 32 ............................ GCCTTGCTGTATGGCGGCTTGTGCCACTGGTT 534439 28 100.0 32 ............................ CCAGCAAAAAGCGCGAGCTTGAGCAAGAATCA 534379 28 100.0 32 ............................ ATCTTCGTTCTGCTCGACACAAATATACGTCC 534319 28 100.0 32 ............................ GCGTATGACCTATACCACGACAAAATCAATGA 534259 28 100.0 32 ............................ GCATACATGGTGGCGTAGAAGAAAAGAGTAAA 534199 28 100.0 33 ............................ ACCAATGCAGTCGATACCAACCCAGTCCAAACG 534138 28 100.0 32 ............................ AATATATGTATCTTTGGTTGTTTGAATTTATC 534078 28 100.0 32 ............................ TTTGCGGAACACAAGACCAATAATTACGCCGA 534018 28 100.0 32 ............................ GCCCACCGCATCAATTTTTGAGCCAGTATTAA 533958 28 100.0 32 ............................ ATATATTTCGCGGTAGGTACGCAAATATTTCC 533898 28 100.0 32 ............................ TTTTGCGATTTTTTGTGATATGGGACTTTTTG 533838 28 100.0 32 ............................ TGATATGGCTGGTTATCTTTGGTCTGCTTATT 533778 28 100.0 41 ............................ CTAAAAAGGGGTCTTTGTCTGTGCTTGCTGTTGTTCCTGTT 533709 28 100.0 32 ............................ AGCAGTCTTTAAAAATTGGTCTCGTTCAGCGT 533649 28 100.0 32 ............................ TTCAAGCGATTGAATTTCAGCAAGAGGAGCTA 533589 28 100.0 32 ............................ AGATGTCGAAGCACTTGCAGAACTTTCAGGTT 533529 28 100.0 32 ............................ ATTACAGCATCAACCACGGGTAACGGGTAATT 533469 28 100.0 32 ............................ TTACTAGCAAAGAAAACAATCATAACGGCACG 533409 28 100.0 32 ............................ CCTGATATGTCACCGATTATCACTATGATTAA 533349 28 100.0 32 ............................ ATCCAAAGCAGAACAACATTACCCAAGCTATT 533289 28 100.0 32 ............................ AATGAGCAGATGGCTGATTTTATTTTATCAAT 533229 28 100.0 32 ............................ TTAGGCGCAACTGGCGCGGTTGAAGCAGGTTT 533169 28 100.0 32 ............................ AAGCCAATATTCACCGGGCGGAATAACAGCAT 533109 28 100.0 32 ............................ AGTAACTTTTTCACCAACAGAGTCAACTTTTG 533049 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ========================================= ================== 55 28 99.9 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGATGCTTATAAAAATCACTTTAAAACGAAGTGTCTTAACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : CTGTTCACAATCTTTTCAACAATAAAGCGATGAAAGCGAGATTGGTAAATTGAAGGCTCGAATTTAAATGACGCTCACAGTTTTTCCATAGACGTCTATTTTTCTCAAGCCAAGCAAACGAACGTTCTACAACCCATCGCTTTGGTATGACTTTAAACGTGTGCAATTCATCTCTTTTGGCAACTTCTGTGGTAACGGTTTCGCCTAAAATAGATTTAACACTATTAGCAAATGCCTCACCTCGATAACCGCCATCAACCATCACATTTTTTACCCGGCTTAAGCGTTTAGCATGTTGATGAAGTAATATTTTGGCACCCTCACGGTCGGTGATATTGGCAGTGGTAATACAGATAGCATGCGGCAAGCCTTGGCTGTCTACTGCAATATGGCGCTTAATCCCTGATACTTTCTTTCCTGCGTCATAGCCTTTGTGTTTGGCGGTATCTGTGTTCTTAACGCTTTGAGCATCGATGATGATAAAACTGGTTTTACCCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //