Array 1 96311-98198 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHB01000047.1 Pseudomonas aeruginosa isolate 78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96311 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 96371 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 96431 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 96491 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 96551 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 96611 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 96671 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 96731 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 96791 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 96851 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 96911 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 96971 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 97031 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 97091 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 97151 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 97211 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 97271 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 97331 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 97391 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 97451 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 97511 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 97571 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 97631 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 97691 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 97751 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 97811 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 97871 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 97931 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 97991 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 98051 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 98111 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 98171 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37182-37815 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHB01000132.1 Pseudomonas aeruginosa isolate 78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 37182 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 37242 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 37302 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 37362 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 37422 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 37482 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 37542 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 37602 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 37662 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 37722 28 89.3 36 ...................TA.C..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA G,C [37744,37748] 37788 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47031-46343 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHB01000132.1 Pseudomonas aeruginosa isolate 78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47030 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 46970 28 100.0 32 ............................ TGGCGAGCCCTGGAGCCGTTTCACTCTGTGAA 46910 28 100.0 32 ............................ TTCGGGTTGTGCGGGAGCTGGCCCTGCCAGTT 46850 28 100.0 32 ............................ TTATGCGCCAGTGCCGGTGGAGCCATAGGCCA 46790 28 100.0 32 ............................ TTCAGCAGCGACCCGGTCAGCAGCACGGTGCG 46730 28 100.0 32 ............................ CTCCTTGCCGGGCGCGGCGGCGAGCAGTTTGC 46670 28 100.0 32 ............................ AACAAAAACGCCGGCTCGAGGGCCGGCGTTCG 46610 28 100.0 32 ............................ AGAACGACGTAGATGATGCGGCGGGTGAACTC 46550 28 100.0 32 ............................ ACAAGAAACACACGCTTGCGGCGCTGGGCGAC 46490 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 46430 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 46370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //