Array 1 420472-422007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVD010000001.1 Listeria booriae strain FSL L7-0767 NODE_1_length_653556_cov_26.750832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 420472 30 100.0 35 .............................. GAAATAAATGAGTGTGTTTGGAGCATTTTTAATAG 420537 30 100.0 37 .............................. AAATAGCTTCGTTGGAAAGTAAGCGTCTTGCCATACA 420604 30 100.0 35 .............................. AATTCTAAAACTAGGCGTGGGAGAGTTGGCAAACA 420669 30 100.0 35 .............................. AAAACAGGTGGCAATGTTACTAAATTCACTTCTAA 420734 30 100.0 34 .............................. AAAGAATTAGAAAGCGAAATCGCAGAGGCTTACG 420798 30 100.0 36 .............................. CTTGTAATGGTTCCTAATGGATTGTGTAGGCTTATT 420864 30 100.0 37 .............................. AAGTATAAAGGTCACTGGTTGAACAATTGGGTCGAGA 420931 30 100.0 35 .............................. TCAAAAATGACAATCCGATCCGCGTACTGATCATC 420996 30 96.7 38 .................T............ GTCGTAACTGATTGAACAACGTTCTGAATCGAGCTTTT 421064 30 100.0 36 .............................. AAAGTAGCTCAAACAGGTAGTTTGTTTAGCAAAGCA 421130 30 100.0 36 .............................. GGTCGATGAGGAGCGTAGACAGCAAGTTATTAAAGC 421196 30 100.0 36 .............................. AAAATCGCTAAAACTCCACTGTGGCGCAAACTCACA 421262 30 100.0 35 .............................. ACCTTTTGAAATCATGAATTAGTTTTTCTCTTTCA 421327 30 100.0 37 .............................. AGAACATTGAAGTAGCATCTAAAAGCTACGAATTAAA 421394 30 100.0 36 .............................. ATCGGAGCAGTCACAATAATTCCAGCTTTCGTGATA 421460 29 96.7 36 ...............-.............. CAAGAACACGTTTACTTAAAATACGAAGGTAGTTTA 421525 30 100.0 36 .............................. AGCTATGAGCAGAACTTTATCACATTGCTTGAGTTA 421591 30 100.0 36 .............................. ACTTTAAGTGCTTCACGGTCTCTGCCATAACAATAA 421657 30 100.0 35 .............................. ACCGATAGTAGCAAAAAAATCACAGAATATGCGCT 421722 30 100.0 36 .............................. GTGGATGATGAACGCTACACTGATGAAAATAGCATG 421788 30 100.0 37 .............................. CTGCTGGACCAAACATTTTTCCGGCTTCCGTAGCCAT 421855 30 100.0 36 .............................. TATCTATTTTCAGGATGAACATGCAGATCGTAGAAA 421921 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [421978] 421978 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCATCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGGTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : ACGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACATCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 98367-98986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVD010000002.1 Listeria booriae strain FSL L7-0767 NODE_2_length_627977_cov_23.586780, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 98367 30 100.0 36 .............................. CTCTCCTTTCGTATCGTGTATTGCTTCGTAACTTTT 98433 30 100.0 38 .............................. TATATATTTCCCTTTTTATCTATAAAATAATGATATGC 98501 30 100.0 36 .............................. ACTGGTATGTCACTAGACGAGTATTTAAAATACTAT 98567 30 100.0 36 .............................. GTTAAAAATGGAAAGATTGACACTGATAAGAAGGGT 98633 30 100.0 35 .............................. TGAACCATGTACTGAATTTCTTTTCGTGTATAAGC 98698 30 96.7 35 ...G.......................... GAAGGTTCGTATGATGCGAATGCTAAACCAATTAC 98763 30 96.7 35 ...G.......................... CAAATCCGGTCGTGTATCAATTTTCTTTTCTCGTC 98828 30 96.7 34 ...G.......................... ATGGATATGTCGAAGTTTCAAGATAGATTTTTAG 98892 30 96.7 36 .................A............ AATAACAACCGAATTTTTGAGGACTAAACCGTGATA 98958 29 76.7 0 ..C.........A....A..-...C..G.C | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 96.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGTAAAAGCGGGAATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGCGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACCAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGAGCACCT # Right flank : CTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAACGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTACGGAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCTGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCTGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTGTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42864-42372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVD010000008.1 Listeria booriae strain FSL L7-0767 NODE_8_length_115865_cov_22.914836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 42863 30 100.0 36 .............................. ACCAGAGTTTGATTCATCTGAAACTGAATCAAATAA 42797 30 100.0 38 .............................. CAGGGTGAAGTGCTTACTTTTGTTACAGGTCGTTACGA 42729 30 100.0 36 .............................. AAGGTAAAATCTCCGCAATGATAAACGACGTCATCG 42663 30 100.0 34 .............................. TTCGAATTAATGACGCTGGTAAACCGTACTCTGA 42599 30 100.0 36 .............................. ATAAACGGGCTGACATTTTTAGCAGTGTTAAATTCA 42533 30 96.7 36 .............C................ CAAGCAGCTAATAGTAGTGTTAACATTAATAATGCC 42467 30 96.7 36 .............C................ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 42401 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 98.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCGTTAAAACATGAAATGAGCAGTTTTGAAGTTCTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATAATTGTGCAAAACGGGAAGAAAAATATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGAGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTTTTCAGTATTAATGGATATTAACCCTCTTAATCTATTGGCCTATCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATAACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGTGACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 47063-46111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVD010000008.1 Listeria booriae strain FSL L7-0767 NODE_8_length_115865_cov_22.914836, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 47062 30 100.0 36 .............................. TATAATAGGTTTAAAGGCTACCTAGTAGAGAACAAT 46996 30 100.0 36 .............................. ATGGAAGGAAAAGAAAGAGAAAATTTAGTGAGACTT 46930 30 100.0 36 .............................. TTTGTTTCGACTACTTTGTCGTAGATTTCCGCGGCT 46864 30 100.0 37 .............................. CGGTTATCAAACTTAATAGCAACGTTATTACAATACC 46797 30 100.0 38 .............................. GTATGCAAGTACCATTAAGGAAATAAATCAGGTCATGA 46729 30 100.0 36 .............................. AAAATATCTAGTTGGTGTCGCATGGAGTGTTTTTCT 46663 30 100.0 36 .............................. TCCAGTACGCCCGGCTCTGTTCCTGCATCGTCTTCG 46597 30 100.0 36 .............................. ATCTTTGCCCCAACCAAAATTGGATTTACTAAATTT 46531 30 100.0 34 .............................. TGATTATCTGAACTGCTGCTGTCAAAACAATTGG 46467 30 100.0 37 .............................. ATCACTGTTGCTTGCTTTTGTTTTTGAATCTGTTGCA 46400 30 100.0 36 .............................. TCGTGCTTTTTGATTACGGATATTGAAAAAGTGGAG 46334 30 100.0 34 .............................. TCTGGACACCCAAACACCCCATCTGTAGCATCAG 46270 30 93.3 34 AG............................ GTTTCTAACTTATGAAGACAACAAAAAATAGCCC 46206 30 96.7 36 ........................A..... TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 46140 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.2 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : ACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCCCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTTTTTTTTGCATAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTGCGAGTCACCATAGACAGAACTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATGCCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //