Array 1 159613-160738 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZE01000191.1 Salmonella enterica subsp. enterica strain SE819 S2_S2_L001_R1_001_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159613 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 159674 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 159735 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 159796 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 159857 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 159918 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 159979 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 160040 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 160101 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 160162 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 160223 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 160284 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 160345 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 160406 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 160467 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 160528 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 160589 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 160650 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 160711 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176997-178660 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSZE01000191.1 Salmonella enterica subsp. enterica strain SE819 S2_S2_L001_R1_001_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 176997 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 177058 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 177119 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 177180 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 177247 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 177308 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 177369 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 177430 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 177491 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 177552 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 177613 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 177674 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 177735 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 177796 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 177857 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 177918 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 177979 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 178040 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 178101 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 178204 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 178265 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 178326 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 178387 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 178448 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 178509 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 178570 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 178631 29 96.6 0 A............................ | A [178657] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //