Array 1 97976-99956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST2143 ST2143_00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97976 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98037 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98098 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98159 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98220 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98281 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98342 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98403 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98464 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98525 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98586 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98647 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98708 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98769 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98830 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98891 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98952 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99013 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99074 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99135 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99196 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99257 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99318 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99379 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99441 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99502 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99563 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99624 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99685 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99746 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99807 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99868 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99929 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116089-117503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZM01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST2143 ST2143_00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116089 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116150 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116211 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116272 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116333 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116394 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116455 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116516 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116577 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116638 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116699 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116760 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116821 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116882 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116943 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117005 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117108 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117169 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117230 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117291 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117352 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117413 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117474 29 96.6 0 A............................ | A [117500] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //