Array 1 1654151-1655119 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABIX02000002.1 Bifidobacterium dentium ATCC 27678 B_dentium-2.0.1_Cont348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1654151 33 100.0 34 ................................. AACATACCTGCCCGATACCGGAATCTACGCAAAC 1654218 33 100.0 33 ................................. TAGTACGATGACAAACCAGTAGATATTTACCGG 1654284 33 100.0 33 ................................. GCATTGAGCCGGTGGATGATGAGGCGAAGTAAT 1654350 33 100.0 34 ................................. CATTCGACTCCGATCGGACGCCCCGAATCCGCCA 1654417 33 100.0 34 ................................. CCATGTTGTCTTATGCAATTGTCCTTTTTCGCCG 1654484 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 1654550 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 1654616 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 1654684 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 1654752 33 90.9 35 ............................TG..A TATGCACGCGCACACCGACATCCGCAGGGAGCAAT 1654820 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 1654886 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 1654953 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 1655021 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 1655088 32 84.8 0 ....................T.-A....A...C | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.2 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : CATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGTCATGGCGGGACGATGC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2087545-2088732 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABIX02000002.1 Bifidobacterium dentium ATCC 27678 B_dentium-2.0.1_Cont348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 2087545 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 2087609 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 2087673 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 2087737 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 2087801 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 2087865 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 2087929 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 2087993 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 2088057 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 2088121 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 2088185 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 2088249 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 2088313 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 2088377 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 2088441 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 2088505 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 2088569 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 2088633 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 2088697 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 19 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : TACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //