Array 1 419270-419572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMJ010000002.1 Bradyrhizobium sp. U87765 SZCCT0109 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 419270 32 100.0 36 ................................ GCGCAAGGCGCAGCGCCGGTCATCGCGCAGCAGGCC 419338 32 100.0 36 ................................ ATGTTGAAGTGCTCGCCTGTCGCAAACATGATCCGT 419406 32 100.0 35 ................................ CCCCAAAACAGAAAGTACCCGGCGCGACGATCAAG 419473 32 100.0 34 ................................ GTATTCACGCCAGTGCCAAAGTAGCTCAGCGGAA 419539 32 96.9 0 .............................T.. | GC [419567] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Left flank : GGTTCTGGTCCGACCAGGGACCGGCGAAGCTGCAGATGGTCGGCCTCGCCCACGGCGCGACACGCCAGGTGATCAGCGGTGCGGCGGAGGACGGCGCATTCTCGATCTACCACCTGCGCGATGACGAACTGCTGGCGATCGATTCCATCAACCGCCCCGCCGACCATATGCTCGGCCGCCGCATGCTGGCGTCGGGCTTCCATCCCGGCGCCGCGCTGATCGCCGAAGGCCCGGCCGCGCTGAAAGCCGCGTTCGCGGAGTTCGGCAAGGCCGTGCCGAGCGCGCGCTAGGATCTTTCCGAGCCGTCCGCCCTCGGTTGTGGCGCGAACCTGAAGCATGCCGGGATTTCCCGGCACCTTCGCGCTCGATCTAACACCCTGAAACATAACAGTATTCACGACCAGCCCCGCGACCTCGGCCAACCTGCAGCGATTTTTCACGACAGGTTCGCGCAGACGCCGCCTTTTCGCCAGCAAGCCGAACAGGTTAAAGGCTGAGCA # Right flank : CGTCGATCGCGCAGTCGGGCCCCATACCCCTGCCCACCAGACCCGCACAGAATACCATCATCGGAGTTGACCACCCTTACCACGACAGAAGACTTGACGAGGCAGCCTCCAGTTTCCACACTTGGAGAATTCGATTTTTTGTTCTTTCGAAGCTCCGCCATTTTCTGCTCCGGCTTCATTCATCCGTCGATTGTCCTCCCTCCGGCAGCGCCATGCACTACGCGCATTCGACCAAACGCGCTGATCGCTCCGACTGGCAGCGGCTTCTCGATCATCTTAACGCAGTCGCACGCCTCGCTGCGGAACTGGGCAACAAGTTCGGCGCAGGCAGGGCTGCAGCGCTGGCGGGGCTTCTCCATGATCTCGGCAAGTATGCGCAAGCCTTCCAGATCTACATTGGAGGCCACGGACCGAGCGTCGATCATGCCACCGCCGGTGCCCAGCAAGTGCTGAAACTGCCGATCGAAGGGCGCGACAGGGCGATCGCCGATCTGCTGACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 427742-429248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMJ010000002.1 Bradyrhizobium sp. U87765 SZCCT0109 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 427742 32 100.0 33 ................................ TGCGATCTGGTCGAACACTAGAAGACGGGGGAG 427807 32 100.0 35 ................................ ACCTGAAGATTGCTGAGACCAGCAAGCATCAGATT 427874 32 100.0 37 ................................ CGGAAGCATATAGCCTTCATCGATAAAGACGCCGATG 427943 32 100.0 36 ................................ GCCACCACGCTGGCTACCGTGAACGCGTCGCCAGGA 428011 32 100.0 34 ................................ GCAGCGCGGCTTCTTCGGCGGCGCGGTCCTGGCC 428077 32 100.0 35 ................................ CTCCAGCGCCATCCGGTCTCAACGGCCTTCTGAGC 428144 32 100.0 33 ................................ TACACGTGGCGGGAACTGCGCCGCGGAAATCGA 428209 32 100.0 36 ................................ ATCGATGGCGATCTTGGGCGAGTTGAAAGCAATCGC 428277 32 100.0 34 ................................ AGAAGCTGCTGGCGATGGGGGTGGACGGCGCGGG 428343 32 100.0 35 ................................ GATAGATTCTGCCGGAGTGAAGACCCCATCCGATT 428410 32 100.0 36 ................................ AGAATCTGCAGCCGTATCTCAATCAACAGGGCGCGG 428478 32 100.0 36 ................................ GGCGCGATTGATCCACGCGCTCTTGCGCACGAGGAT 428546 32 96.9 37 ......................A......... CTTCTGCCAAGCTCGCAGCCATTCGCGAGCGAGGAAC 428615 32 100.0 34 ................................ CACGGAGACGTGCAATATGACCTGAAGCCAAGCC 428681 32 100.0 35 ................................ CGCTATTTGATCGCCACGTCCTCGTTCACGGTGAC 428748 32 100.0 34 ................................ AGACCCGGTCTCACCGGTCCCCGCAAAGTGTCGC 428814 32 96.9 35 ......C......................... TCCGCCATCAACGCCTCAACGTCCTTGCCTCCACT C [428818] 428882 32 100.0 34 ................................ TTCTGGTTCGTCGATGCCAGCCTGTCGGCTCCAG 428948 32 100.0 35 ................................ CAGATTTCGGGTTCGGCGACCGATCAGGGCGTGTG 429015 32 100.0 35 ................................ GGCTCGCAGATCGCGATGAGATCGCGCAGCCCCTC 429082 32 100.0 35 ................................ AAACCATCGTTGTTTCCTATTTCGGGGCGACTGCT 429149 32 93.8 36 ............................C.G. CAGGTCACTGTGCCCGGGCTCTGTCGGGTGACGTTC 429217 32 87.5 0 ................G.......T.GA.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.9 35 GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Left flank : TTCTGGAAATAGCGAACTCATCATGCTCGTCCTTGTGACCTATGACGTGCGTACGAGCGAGCCGGGCGGAGAGGCGCGCCTGCGGCGCGTCGCCAGAGCCTGCCGTGACTATGGCCAGCGGGTCCAGTTTTCAGTTTTCGAGATCGAGGTCGATCCGGCACAATGGGCCAGGCTGAAGGCCCGCCTTGAGGGCTTGATCAAACCCGAGCATGACAGCCTGCGTTACTATTATCTGGGTGCCAACTGGCAAAGGCGCGTGGAGCATGTGGGCGCCAAGCCCGCAGCCAATCTCGGCGGCCCCTTGATCGTCTAACAACCCCGGCGCGAACCGCAAGCGCACCCGAATCTTCCGGGATGTTCGCGCTCTCCGTAAGACGCTGATGATAAAATAGAATCCGGCGACATATCACTCACAGCACAGACGCAAAGACGATCAGCGCGACCACTTCGCGCAACGGACATAATTTCCCATGACAACAGAATAGGTTAGAGCAGGAGCG # Right flank : CATCGCGCAGACGGCGTGAACGTATGTCGCCTCCAGGCACCTGGCATTGCGTATGTGCTGCGCAGCACCACGAATATCCCCCGCTTTGAACGATTCCAGCGGCAAGGCCACCAGAAGGGATTATAGCCGCCAAGCGGATATGCCACACACACCGTCTCCTCCACCGGTCCGACGCACCCCGCGGTTCACCCGGTGCGGGCGCGACCGACGGTGAGACGATGACCGGACCGACCCTGCGCCGCTGGCTGTGGGTGCACAAGTGGACCAGCCTGATCTGCACGCTGTTCCTGCTGCTGATCTGCATCAGCGGCCTGCCGCTGGTGTTCCGCGACGAGATCGGCGACCAGCAGGATGACGGCCTGCCCTATGCCAGCGTCGGACTGGATGCCCGGAGCGTAAACCTCGACGAGGTCGTCGCGACCAGCCGCAAGATGTATCCCGGTGAAACCATCGTCTCGGCGTTCGTCGACGACGACGAGCCCAGGATCATGGTGTTCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //