Array 1 878-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEQ010000010.1 Bifidobacterium pseudocatenulatum strain YIT12242 YIT12242_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 877 33 100.0 33 ................................. ATTTGTTTCGGGCCACAGGGCCCAGTGCCGGGG 811 33 100.0 36 ................................. ATCATACCTTCAGACACGCACCGGCGTGACCAGCTG 742 33 100.0 33 ................................. TCAGCCGTGGCAGTCCGACTCATGTTGCTCCCA 676 33 100.0 34 ................................. ATCGACGAATGGGGAGAATTAAAGCAGAAGGCGA 609 33 100.0 35 ................................. CACTGCATGGCGCGCTTGCCGACGATGTCCTGCTG 541 33 100.0 36 ................................. GATCTTCAGGGGCAACAGTGAGGGTTATCAGAGATC 472 33 100.0 35 ................................. GAAACGGTTGAAACGATTCCGTCAACTATCTGCAA 404 33 100.0 37 ................................. CCGAAGATATGTTTGGCATTGGCGGTGCCGGTGGCAA 334 33 100.0 34 ................................. TACGCCCTCGATACGATTGAGATGCGTTTCCAAC 267 33 100.0 34 ................................. AATCATGATGCCGCCGCCTAATAATGCGAAGGGA 200 33 100.0 34 ................................. TCTCCCGTTCACGCCGTGTTCTCTCATGCCCCTG 133 33 100.0 33 ................................. ACGTCGAACGGCTTGGGCATGTCCAAACTGTTC 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 13 33 100.0 35 GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : GGCGTCTACGTTTAGTGGCAAAAAGCTGCATGAAATATGGGCAACGCGTGCAAAATAGCGTTTTCGAATGTAGCGTTACTTCTGCGGAGTATCTCACGCTTAAGCATGATCTGTTGAGCATTATCGATGTCAAAACGGATAGTTTGAGATATTACAATTTGGGAACGAACTATTCACGGCGCATTGAACACTTAGGCGTTCAACGTCATGTTCCCGTTGATGGAGTCATGATGGTATGACTTCTAAACGACATGCAGTGCGACCCTGAAGCAGTCATGAGTTACAGGTAGGTTCGCACCTTTTTTGTGCGGAGGAAATTAAAACTGGAACCCTGATGTAATTTCGGATTGTTGTTTGATAATCGAAAAGTGTAGTCAGATAGAGTTTGATCTTTGCATTTGGACGTATTTGGGGCGGTGGGGAACTGATGTAATATGTGTATCAGCCGAGATGAGGTTTTGCTTGAATCATTATTTGGTCAAAAATGTCTCATTTCTGCG # Right flank : TTTTATGTCGGCCTTCATGTCGTCAGCCTTGTCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 101800-101096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEQ010000009.1 Bifidobacterium pseudocatenulatum strain YIT12242 YIT12242_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 101799 33 100.0 35 ................................. ATGCAGTGGTAGCAGCGTTGCGTGACGCCCGCAAC 101731 33 100.0 33 ................................. AATTGGGCTTCGGACAGTTGGCGGTATGCTTCG 101665 33 100.0 35 ................................. TTCGACCTTGACACTAGGGTGCCTGTAGGCGTATT 101597 33 100.0 34 ................................. TCCCACACGGTCTGCTCCACGGCCTTGCCGTACC 101530 33 100.0 34 ................................. ACTTACGATGTGCTGGACAAGGCGCATGGAGAAG 101463 33 100.0 35 ................................. TCCAAGATGAGGGCTGACGGCACTCTCTCCACAAG 101395 33 100.0 34 ................................. TTCTGCTGGGACGAAATGTTGGAAACCACCAATT 101328 33 100.0 33 ................................. ATCTGCACGGACGGCGAAATCCAGTACGAGTAT 101262 33 100.0 34 ................................. TGCATGTCCTTTAGGACGCTCAGATCAGGCTTGA 101195 33 97.0 34 ........T........................ TTTTGGACCGTTTGGTCAAGCGAAGCGTGCCCGG 101128 33 81.8 0 .......T..TT.C..A...C............ | ========== ====== ====== ====== ================================= =================================== ================== 11 33 98.1 34 GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : | # Right flank : CGGTGTCTGCAGCGTTCCGGCCATCGCGTGAATGTCGCTCTCCCTGTTTATGTCCAGTGTTCTCCGCACATGCGGGGATGATTCCGCATGTGCGGGACTGTTAGTTTCAATGACAATCCGAGGGGGTGAAAACGAGTTTATGGGCACGCGTGCGGAGTCTCAGATGCGCAGAACTCCTCACGCAGCGCATATCACAATCCCAGCCAGGCGCGTAGGTCACGAATTTCCTGATCGCAGATGCCGTGGACCATTCCCGGATATTCGAAATACGTGAGATTGCCGGTTTGCGCAAGTTTGTTGTGCGCGCACTGTTGGTCGGCTAAAGGAATTGTGCGGTCTTCGCTGCCGTAGCAGAGTGCGAATCGCGTGCGTCCGGTCGCGGGCAAAGGCTCAGCGGTTTCGCCTTTGAATGATGGGCTCATCAGAATCGCCCTGTCGAACGCATCGGGATGTTCCGCAACCATGCGATACGACAGGTATCCGCCCTGCGAAAACCCGAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //