Array 1 16326-14343 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUJ01000007.1 Pseudomonas aeruginosa strain MRSN30858 MRSN30858_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16325 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 16263 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 16202 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 16141 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 16080 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 16019 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 15958 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 15897 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 15836 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 15775 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 15714 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 15653 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 15592 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 15531 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 15470 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 15409 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 15348 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 15287 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 15226 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 15165 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 15103 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 15042 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 14981 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 14920 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 14859 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 14798 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 14737 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 14676 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 14615 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 14554 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 14493 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 14432 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 14371 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26626-25498 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUJ01000007.1 Pseudomonas aeruginosa strain MRSN30858 MRSN30858_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26625 29 100.0 32 ............................. CTGTCGGCGCCCTCGGTGTGGATGTCCTTGAG 26564 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 26503 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 26441 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 26380 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 26319 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 26258 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 26197 29 100.0 32 ............................. GCAAAGAGGCTGGGTGGCAACCTCGGCCAGTG 26136 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 26075 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 26014 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 25953 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 25892 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 25831 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 25770 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 25709 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 25648 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 25587 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 25526 28 79.3 0 A..........A..C.....-..A....T | C [25517] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //