Array 1 651-879 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 651 29 100.0 37 ............................. CCCGCACATCTCGCAGACACCTTTCGATCTATCTTTC 717 29 100.0 39 ............................. CTATTCAACTCATTACGACATGATACCGACTCTATCGGC 785 29 100.0 38 ............................. TTATATCATGCCAATTTCTTTGGTGCTTATCGGAAGTT 852 28 86.2 0 A.......A.........T....-..... | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 96.5 38 GTTTGTAACGTACCTATAAGGAATTGAAA # Left flank : AATCCAAGCAAACGCGCTCAAAAAATACGAAGCTTTCCATGGAAAGCCTTTGGCGGTCGAAAAACCGCTTTTGCTGACTCCTCTTCATCGGGAACGAATTAAGCCAATAACATCTAAGTTTAAGTCAACATTGATTAAAGGATGGACAGGAGATTTCTTATTGGAAGGCGATTTAGATTTGATTCAATTAACCTATGATGTGGGACTTGGCGCTAAAAATTCTAACGGGCATGGGCTTTATGAGGTAGTCCGAAACCTCAGGGATGGATTGTAAACTTGCTGTATGTTGGTGAAGGGATTACCCTATATTCGGTAAGAATTATTGTTTGCAATATTGTCGTCGACCCCCAATAGCGTAAAAAAACCGGGGGATCGACGACAATTGAATTTTACTGAGAAGCCTATCACGTCAAGGAAAAGTGTGGTACATTGGTGTTGGCTTCTTTCTTATTAGGGTTATTTTGGTTTCAACAAAAGCTATAACAGTGGGCTTTTAACGG # Right flank : ATAAAAGAAATGGTTCAATTATATGCTTCATGGTTACGTTTGAAAATACTTATGAGGATTGAATTCAGGGGATGAAATAAAAACGTGTAGCGGTTGCGAGATTTTGAACGTGATAGAGGAAAATGAAACTTAACATAAAATATTCAATTCAGGTTGTTAATTTTACCAAGACTAACGGTTTGTATAAATTGTCAGAAATTATACGCCTAAGAATTTTGTGAAGTGATTGATCCCTCAGGGATTGGTAATGAACTTGCTGTAAATTGATTAATATAAAGGAAACTTTTCAATTTACTATACCGGACGATCTTTATTTTTAAATGTTGTCGTCGACCCCGAATAGCGTAAAAAACCCGGGGGATCGACGACAACGAATTTTGTCGCGAAACCTATGACATCAAGGGAAAGTATGGTACATTGATGTTGTTTCTTTTCAATTAAGATTTATAATAATTTCAGAAAAACGCTGTAACAGCAGGCTTTTCACGGGTTTGTAACGT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATAAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 2147-2310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2147 29 96.6 38 ....A........................ CTCGTTTTTTTGTACGAGCAGTAGACAAATTCGGGAGT 2214 29 100.0 39 ............................. CCCACTTGTAGCAGGGGCTACTATCCAGTTTGAGCTTGA 2282 29 96.6 0 ........................A.... | ========== ====== ====== ====== ============================= ======================================= ================== 3 29 97.7 39 GTTTGTAACGTACCTATGAGGAATTGAAA # Left flank : TATAAGGAATGAAATAAGAGAAATGCTTCAAATATAAGCTCTCATGGTTACGTTTGAAAATATTCATGAGGATTGGATTAAGGACATGGGAATGAGAAGCGTGTGTCGGTTACAAGATTATTAATGTGATAGAGGAAAATGAAGCTTAACAAATGTCAATTCGGGATGTTAATTTTACCGAGACTAACGGTTTGTATAAATTGTTAGAAATTATACGGCTTTTGAATTTTATGAATTGATCCCTCAGGGATTGGTAATGAACTTGCTATAAATTGATGAATAGAAGAAAACTTTTCTATTTACTATACCGGGAACTATCTTTATTTTTAAATGTTGCCGTCGACCCCCAATAGCGTAAAAATCCCGGGGGATCGACGACAACTGAATTTTGTCGCGAAACCTATGAACATCAAGGGAAAGTATGGTGCATTGATGTTGTTTCTTTTTAATTGAGATTTATATTAATTTCAGAAAACGCTGTAACAGCAGGCTTTTCACGG # Right flank : ATACGACCTGATTTCATCACGTCCATGTTTCGGCTTGAATGTTGTATTGTACCTTTGATAGTATCGATATTTACCCAAAGGGGGACAAGATATTGAGAATCAAAATTACATTAACCTTTGACGGAAAACTTACCGTACCTATAAATCATCAAGAATGGCTTCATGGCCTTATTTATCATAGTATCAGAGATGATGAATACCGGGAGAGGAAAACGTCAGTTCCGCATGTTTACTTTTTCCAGACTGAATGGATCATACAAGCTAGATAGAGACTCTTCTACTTTAGAATTTGAATCACCAAATGTTTCATTTATATTTTCAGCATATGATAAAAAATTGATTCAGGAATTGGTATCATCTTTAATAATAAGAGATGATCTTCGTTTGGGCAGCAGTCAAGTTAAGGTTGTTTCTATTGATCAAATTCATGAAACCGTCAGCGAGAAAATGCAAATACGTTTTCTCACGCCTGTTACTATGTACAGTACATTTCAGCTTGA # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 3364-3661 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3364 30 100.0 39 .............................. CTCCTAAGAAGTATAGAAATAGATAAGCATCTAGGGGGC 3433 30 100.0 35 .............................. TTGAGAATGGATACAATTCTGACGGTTTGACCAAA 3498 30 100.0 36 .............................. CCGATTACTCCCGCTTCCTTTAGGCCGTCAAATATG 3564 30 100.0 39 .............................. ACGGAATCTGTGAAGGCATTCATATCAATACCGGACATT 3633 29 83.3 0 .................G.....-...TTT | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 96.7 38 GTTTGTAACGTACCTATAAGGAATTGAAAC # Left flank : AATCCAAGCAAACGCGCTCAAAAAATACGAAGCTTTCCATGGTAAACCTTTGGCTGTCGAAAAACCGCTTTTGCTGACTCCTCTTCATCGGGAACGAATTAAGCCAATAACATCTAAGTTTAAGTCAACATTGATTAAAGGATGGACAGGAGATTTCTTATTGGAAGGCGATTTAGATTTGATTCAATTAACCTATGATGTGGGACTCGGCGCTAAGAATTCTAACGGACATGGACTTTATGAGATAGTCCGAAACCTCAGGAATTGATTGTAAACTTGCTGTATGTTGGTGAAGGGATTACCCTATACTTGGCAAGAATTATTGTTTGCAATGTTGTCGTCGACCCCCAATAGCGTAAAAACCCCGGGGGATCGACGACAATTGAATTTTACTGAGAAGCCTATCACGTCAAGGAAAAGTGTGGTACATTGGTGTTGGCTTCTTTCTTATTAGGGTTATTTTGGTTTCAACAAAAGCTATAACAGTGGGCTTTTAACGG # Right flank : TCAAAGGCAAGTTATTTTTACCAATCGTTGATATTGAACGTGATCGAGGAAATGAAATGTAACGGATCAGCTTTCGGTACTTAGAGATTTTAGGCTAGTAGCAATTCAAACGTAAATGGAAAATTAAAAAATATCGATAGTATCGATATTCACCCAAAGGGGGACAAGATATTGAGAATCAAAATTACATTAACCTTTGACGGAAAACTTACCGTACCTATAAATCATCAAGAATGGCTTCATGGCCTTATTTATCATAGTATAAGGGATGATGAATACCGGGACTTTTTGCATAATACGGGCTATCAACGAGGAAAACGCCAATTTCGCATGTTTACTTTTTCCAGATTGAATGGATCATACAAGCTAGACAGAGACTCTTCTACTTTAGAATTTGAATCACCAAATGTTTCATTTATATTTTCAGCATATGATAAAAAATTGATTCAGGAATTGGTATCATCTTTAATAATAAGAGACGATTTACGTTTGGGCAGCAG # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 4819-5301 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4819 30 93.3 39 .................A...........C TGGCATTCTTCAATTCTGTTACTTAAATATGTTCTATCC 4888 30 100.0 37 .............................. CATCGACGAATTGTTCATCGATGCTGTACGGCTCTAG 4955 30 100.0 38 .............................. GAATCTGTTGCACAAGTGTACAGAGCGAGGTATCCTTC 5023 30 100.0 36 .............................. TTGCAGTTAGGGTGATATGAAGGGGATTTTATGCCA 5089 30 100.0 35 .............................. TCCTCGTCAGATGGTTCCATAGCTATGTAATCTGG 5154 30 96.7 36 ........T..................... CCGAAATCGAAGCGATCCGCCATAGAAATGGCGTCC 5220 28 83.3 22 ......-.T..............-...TT. CAAAGGTAAGTTTTTACCAATC Deletion [5270] 5270 30 76.7 0 ...GA..TT.A..G.........A...... | G,C [5285,5288] ========== ====== ====== ====== ============================== ======================================= ================== 8 30 93.8 35 GTTTGTAACGTACCTATGAGGAATTGAAAT # Left flank : TAATCCAAGCAAACGCGCTCAAAAAATACGAAGCTTTCCATGGAAAGCCTTTGGCGGTCGAAAAACCGCTTTTGCTGACTCCTCTTCATCGGGAACGAATTAAGCCAATAACATCTAAGTTTAAGTCAACATTGATTAAAGGATGGACAGGAGATTTCTTATTAGAAGGCGATTTAGATTTGATTCAATTAACCTATGATGTGGGACTCGGCGCTAAGAATTCTAACGGGCATGGGCTTTATGAGATTGTCCGAAACCTCAGGGATGGATTGTAAACTTGCTGTATGTTGGTGAAGGGATTACCCTATACTCGGCAAGATTACTGTTTGGAATGTTGTCGTCGACCCCCAATAGCGTAAAAACCCCGGGGGATCGACGATAATTGAATTTTACTGAGAAGCCTATCACGTCAAGGAAAAGTGTGGTACATTGGTGTTGGCTTCTTTCTTATTAGGGTTATTTTGGTTTCAAAAAATGCAATAACAGTGGGCTTTTAACGG # Right flank : TGTAACGGATCAGCTTTCGGTATTTAGAGATTTTAGGCTAGTAGCAATTCAAACGGAAAATTTAAAAAAATCGATCAATAGTATCGATATTCACCCAAAGGGGGACAAGATATAGAGAATCAAAATTACATTAACCTTTGACGGAAAACTTACCGTACCTATAAATCATCAAGAATGGCCTTATTTATCATAGTATTAGGGATGATGGATACTGGGACTTTTTGCATAATACGGGCTATCAACGAGGAAAGCGCCAGTTCCGCATGTTTACTTTTTCCAGACTGAATGGATCATACAAGCTAGACAGAGACTCTTCTACTTTAGAATTTGAATCACCGTATGTTTCATTTATATTTTCAGCACATGATAAAAAAATGATTCAGGGGATCGACGACAATTGAATTTTACTGAGGAGCCTATCACGTCAAGGAAAAGTGTGGTACATTGGTGTTGGATTCTTTCTGTTCAGGTTTATTTTGATTTTAAGGATTGCTGTAACA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 5 6308-6659 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================ ================== 6308 30 100.0 38 .............................. TCTGCTACAACCTCCGTCACGAAAACCTTCTTGCCTTC 6376 30 100.0 35 .............................. TTGCAAAAAAGACCCCGATCGCTGCGCCTATGCCG 6441 30 100.0 92 .............................. TCATCTCCGCTGTGTGTGCATTCTTCATGGCCGTAGTTTTGAGGAATTGAAATCTTCCCGTATGTCTACCATCTGGGATTACAACGTCTGAA 6563 30 100.0 37 .............................. TTTCTATCCGGCTGATCGTTGTGGTTGTACCAGAGGA 6630 30 93.3 0 ....C...C..................... | ========== ====== ====== ====== ============================== ============================================================================================ ================== 5 30 98.7 51 GTTTGTAATGTACCTATGAGGAATTGAAAT # Left flank : TTTAACGGGTTTGTAACGTACCTATAAGGAATTGAAATTATTTAGGGTGACTCTTAAAACTATCCGGGTTTATTGCGTTTGTAGCGTACCTATATGGAATGAAATAAAAGAAATGGTTCAAATATATGCTTCATGATTACGATTGAAAATACTTGTGAGGATTGAATTCAGGGGATGAAATAAAAAGCGTGTAGCGGTTGCGAGATTTTGAACGTGATAAGGGAAAATGAAATTTAACATAAAATATCAATTCCGAATGTTAATTTTTCCAAGACGAACGCTTTTATAAACTTATCAATTGACTATACCGGGAACGATTTTTATTTTTGAATGTTGTCGTCGACCTCCAATAGCACAAAAACCCCGGGGGATCGACGACAAATGATTTTTACTATAAAGCCTATGACAACAAGGAAAAGTGTGGTACATTGGTGTTGGATTCTTTCTGTTCAGGTTTATTTTGTTTTTAAGAATTGCTATAAGAGCGGGCTTTTAACGGG # Right flank : TTAGGATGGCTAAATGGGGAGCGGTAATGTAGCGCAATTAGGAGTGGTTCGACTTGTAGAAAGGGTTGAGAAACAGGTTTCTGTTTATTTCTCGATGCTTCAGCCGTCTAAAAACAAAGGAGCGAGATAATTCTTGCTCCTTTTCATGTGTTTCCTCGTAATATCATTAAATTTACAATATATATACGACATGGTAAAATGTAGGTGGTTATTTGATGAGAAGGAGGGATGATATTGGACGCAACGATCATTACAACAATCGGTGAACTAATCCAAGATACAAGGCGCTCATTAAATATGACGATCACTCAATTGTCAGAACTATCAGGTGTTTCAAGAGGTACGATTTCAAGAATTGAGAATGGCGAAGTAAAGCGTCCAGAGTTTTCGAGTGTACGTCCATTGGCAATGACATTGAATATTCCTTTTGAAACATTGGTTGATTATTATGCTGAAATCGAAAAAAGAGCTGAAACATTGCTAAGTAGCTACAGTACGAC # Questionable array : NO Score: 7.53 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-1.46, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAATGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 6 14501-14731 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000002.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14501 30 100.0 37 .............................. AACGTATCCGCTGATTGAGCCAAAGCTCGGTGAATTT 14568 30 100.0 37 .............................. TCTATTTCATCCCGGACGATCTTCTCCACTTGTCTCC 14635 30 96.7 37 .....................T........ TGGTTCTCCGGCGTGTTGATAAATTCGACCACGTCAA 14702 30 90.0 0 ....C...................A.C... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 GTTTTGAAAGTACCTATAAGGAATTGAAAC # Left flank : AGACTTCTAAAATATACCAATTAGTCTGTAAGTCATTTATACTATATATTGGTATAAATGTAAATAGGGAGTGGGGAAGTTATATTGAGGTGTTAGAAGAACATCTATATAAGTCGCAGTTGTTCGGTTGGTCGACGAGCTTTCACGGAACAATAATGATGTGTATGACTAAACAGTATGTTTAATTGAATTTAGCCCATTGCTTTGCATGTTCATATAGTTAAGATTAAAATAGAAAAATAGAAAGAAAGTGCGATTCTACATAAAAGGTGAACAAGCTAGCTGGAATCTACGTGTATGATTTCAACAAATCGTCGTCGACCTCCAATAGCGTAAAATCTCCGGGGGATCGACGACAATTTGAAAATTGAAGATATCGTCAGTAAGAAGTAGATATTTTGAGATAGTTTATTGTATTTAGATAAATAGAAATTAGTGAAGCTGACTTGTAGGGGCAATTGCTGTTTGGTATTATTAGCGTAGTGGCGCCACTTTTTGGG # Right flank : CCTTGAAAAAACATAGGAGAATCAGGGGACGAAGCATCTGCAATCAAGGTCAAAGAAAAGTAACTTGCTGAATACGATACAATGATCGCAGAAAATATTAAGGAGATTTGTCTTGTCGAGGAAGCTTTTACGACAAAAGAATAAGTCAATATCACTAACATTTAGGTCTCGCTTACGCGAGGCCTTTTTTGATTGAGAGGAGGCAAAGGATGTGAACAACGAATAAGGGAGTTTGCGAGGGAAGAACTAGCTGCCCTTCAATCGGGGCAGCTAGAGAAATAATCATTGAAATCGATTAAGCAGAGTTGGGAAAGAACTGTTGCGGAGGCTTTGAAAAGCATAGAAGAAAAATCCTAGTCTGAATCGATAAGTTCGAGGCGCTCAAGAATTTTAATTGTCGTCAGAGCTGATAAGCGAACAGTCAATTCAACATTACCTGTTAAGACAGAATCATCTTCCAGGGCGTCTTTATTTTTGGCGAAAACCTCTTCGGTAACTTC # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAAAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1184-957 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1183 30 93.3 37 ....A....T.................... TATCCAATTTCGTTTTTTTCCAACTTTATTTCGCCAG 1116 30 100.0 36 .............................. CTCTATTGTCATTAGTTATTTCATGCATAACTTTAA 1050 30 100.0 35 .............................. TTGGTTCACCTCCTTCCTAATGAAAAAGGGACGGG 985 29 86.7 0 ............T...........-..TT. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.0 36 GTTTGTAACGTACCTATGAGGAATTGAAAC # Left flank : CCCCGCAAGTACATCAGCAGGCTGTGCATTTCCTGACGTTTGTAATGTACCTATAAGGAATGGAAAAAGAGAAATGGTTCAAATATATGCTCTCATGGTTACGTTTGAAAATATTCATGAGGATTGGATTTAGGGCATGGCGATGAGAAGCGTGTGGCGGTTGCAAGATTATTAACGTGATAGAGGAAAATGAAGCTTAACATAAAATGTAAATTCAGAATGTTAATTTTACCAAGACTAACGGTTTGTATAAATTGTCAGAAATTATAAGGCTAAGAATTTTATGAAGTGATTGATCCCTCAGGGATTGGAAATGAACTTGCTGTAAATTGATGAATAGAAGAAAACTTTTCTATTTACTATACCGGGAACGATCTTATTTTTAAATGTTGTCGCGAAACCTATGACATTATGGGAAAGTATGGTACATTGATGTTGTTGCTTTTCAATTAAGATTTATATTAATTTCAGAAAACGCTGTAACAGCAGGCTTTTCACGG # Right flank : TAAATGTAAGTTATTTTTACCAATCGTTGATATTGAACGTGATCGAGGAAATGAAATGTAACGGATCAGCTTTCGGTATTTAGAGATTTTAGGCTAGTAGCAATTCAAACGTAAATGGAAAATTAAAAAATAACGATAGTATCGATATTCACCAGCAGGGGGAAAGATATTGAGAATCAAAATTATATTAACCTTTGACGGTCGATAAACCGCTTTTGCTAACTCCTCTTCATCGGGAACGAATTAAGCCAATAACATCTAAGTTTAAGTCAACACTGATTAAAGGATGGACAGGAGATTTCTTATTGGAAGGCGATTTAGATTTGATTCAATTAACCTATGATGTGGGACTCGGCGATAAAAATTCTAACGGGCATGGGCTATATGAGGTACGAAACCTCAGGGATGGATTGTAAACTTGCTGTATGTTGGTGAAGGGATTACCCTATACTCGGCAAGGTTACTGTTTGGAATGTTGTCGTCGACCCCCAATAGCGTAA # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 2635-2334 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2634 30 100.0 37 .............................. TAGCAAGCGTGGACAATGTTGGCAATGATGTTTTGGA 2567 30 100.0 36 .............................. GCCAACCGTAACTTGATATCTTTGATTCGTAGTGAC 2501 30 100.0 39 .............................. CTGAGCGCTGCATAATCGTCTGGGTTGTCGAGCAATCGC 2432 30 96.7 40 ........C..................... ACAGCAGAGAACACGTTACCATGCTCTGTGACAGCAACAG 2362 29 86.7 0 ........C.............-....G.T | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 96.7 38 GTTTGTAATGTACCTATAAGGAATTGAAAC # Left flank : CCCACTATGAAAGTTTGTAACGTACCTATGAGGAATTGAAACCCACTTCGCACAGAGCCAGTATAAATATATAAGGTCATGGTTTGTAACGTACCTATGAGGAATTGAAACGCCAGCATGACCACCGCTTGCTCCCGTGTAAGCAGGTTTGTAACGTACCTATGAGGAATTGAAACAGGGGTAAAAAAATCGACTATACGCTCGTTAGCCGGTTTGTAACGTACCTATGAGGAATTGAAATCCTCCCATAGAGGGTCGTAGCCCGTGTTGGTTGCAAAGTTTGTAATGTGGTGAAGGGATTTACCCTATACTCGGTAAGATTATTGTTTGGAATGTTGTCGTCGACCCCCAATAGCGTAAAAACCCCGGGGGATCGACGACAATTGAATTTTACTGAAAAGCCTATCACGTCAAGGAAAAATGTGGTATATGAGTGTTGGCTTCTTTCTTTTAGGGTTATTTTGGTTTCGAAAAATGCTATAACAGTGGGCTTTTAACGG # Right flank : AAGAGAAATGGTTCAAATATATGCTCTCATGCTTACGATTGAAAATATTTATGAGGATTGGATTCAGGGCATGGAAATGAGAAGAATGTGGCGGTTACAAGATTATTAACGTGATAGAGGAAAATGAAGATTTGTATAAAATGTTAATTCGGGACGTTAATTTTACCAAGACGAACGGTTTGTATAAATTGTTAGAAATAATACGGCTAAGAATTTTATGAAGTGATTGATCGGGGATTGGTAATGAACTTGCTGTAAATTGATGAATAGAAGAAAACTTTTCTATTTACTATACCGGGAACGATCTTTATTTTTAAATGTTGTCGTCGACCTCCAATAGCGTAAAAAAACCGGGGGATCGACGACAACTGAATTTTGTCGCGAAACCTATGACATTATGGGAAAGTATGGTACATTGATGTTGTTGCTTTCCAATTAAGATTTATACTAATATCAGAAAATGCTGTAACAGCAGGCTTTTCACGGGTTTATAAAGTACC # Questionable array : NO Score: 8.90 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAATGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 3189-2894 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3188 30 100.0 36 .............................. ATCAAATAGGGAACAGCAAATGATCCCACTATGAAA 3122 30 100.0 39 .............................. CCACTTCGCACAGAGCCAGTATAAATATATAAGGTCATG 3053 30 100.0 35 .............................. GCCAGCATGACCACCGCTTGCTCCCGTGTAAGCAG 2988 30 100.0 35 .............................. AGGGGTAAAAAAATCGACTATACGCTCGTTAGCCG 2923 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 99.3 36 GTTTGTAACGTACCTATGAGGAATTGAAAC # Left flank : CGAATCCGATTAAAATATTAGAGAATCGGTCGGCGTATATTGAACAGTTTATTGACGCAATGTACAGAACGAAAGAAGCAAGTGATATATCCTATTTTGATAAGGTTCATTTCGAAAACTATGTGCTTAGCAAAGTGGAAGAGAGTAAGATCCCCGGAGGGGCGGGCACAAAGCAAAACCCGAAAGATGTCAATTGGGATAATGCTGCTGATGAGATAGCCAAGGATAGCAATAACGGAAAAGGCGGAGGCTATCCAAAGTCTTGGCGCTTAAAAACATCCCAGAAGTAAGTGGTACAGGTTTACAGAAAGGGAGTAAATGGTTTAGGTTTAAGTTGTCGTCGACCCCCAATAGTGCAAAAATCCCGGGGGATCGACGACAATTGAATTTAATCGCAAAACCTATGACATCAAGGAAAAGTGTGGTACATTGATGTTGTTGCTTTTCAATAACATTTATTTTAATTTCAGAAAAACGCTGTAACAGCAGGCTTTTCACGG # Right flank : CCTCCCATAGAGGGTCGTAGCCCGTGTTGGTTGCAAAGTTTGTAATGTGGTGAAGGGATTTACCCTATACTCGGTAAGATTATTGTTTGGAATGTTGTCGTCGACCCCCAATAGCGTAAAAACCCCGGGGGATCGACGACAATTGAATTTTACTGAAAAGCCTATCACGTCAAGGAAAAATGTGGTATATGAGTGTTGGCTTCTTTCTTTTAGGGTTATTTTGGTTTCGAAAAATGCTATAACAGTGGGCTTTTAACGGGTTTGTAATGTACCTATAAGGAATTGAAACTAGCAAGCGTGGACAATGTTGGCAATGATGTTTTGGAGTTTGTAATGTACCTATAAGGAATTGAAACGCCAACCGTAACTTGATATCTTTGATTCGTAGTGACGTTTGTAATGTACCTATAAGGAATTGAAACCTGAGCGCTGCATAATCGTCTGGGTTGTCGAGCAATCGCGTTTGTAACGTACCTATAAGGAATTGAAACACAGCAGAG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 13238-12869 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13237 30 100.0 38 .............................. ATGGATGACGTAGTGAAATTATTGCAGGATCAAAATGA 13169 30 100.0 40 .............................. AAATCCCATCGTGGCTCATATAATCCATCAGGCATTTTAT 13099 30 100.0 36 .............................. TCAAGTGCTCTATCGTAATACTCATAATAATCAGCA 13033 30 100.0 37 .............................. CTGATTGCCTTTGCTTCACGAACCAGCACTACAGTAG 12966 30 100.0 37 .............................. TCGTACTCAGGCTTACGTACTGCCTGCACTTTTGTAA 12899 30 90.0 0 ....................A....A...A | C [12872] ========== ====== ====== ====== ============================== ======================================== ================== 6 30 98.3 38 GTTTTGAACGTACCTATGAGGAATTGAAAT # Left flank : GAATTATTGTATATCTTAAACGTGCGGGCAGATTATAGCTATATAAATGATAAAGTCTAATATCAGGACATTAATGGCGGAACATCGGATTGATGATATTACCGAATTAATGAATCGATCAGGACTTAGTAGAAATTCGATTAATAAGTTGTATCGAGAAACGAATATCGAAACTACAAATCTGGAAACTTAAATAAAGCTATGCGATACATTTAACTGTAAGCTTTCTGACTTGATTGAATATGTACCGAATAGTGAGAATTGATCTAATAATGAAAGTAACAGTGACTGGAATTGCGACTGTGAAATTTTGTCGTCGACCTCCAATAGCGTAAAATTCCCGGGGGATCGACGACAAAATGAAATAAGGAGATAATAAGCGGAAACCGTAGATTAGATGTGAAATAATTTGATTTTCTGAGCTAGTTCATGTACCTCTATTAGGCTTGTGCGAAGAAGAAGCGTTTAGTAAAATTGGCGTAAGAGCAGCACTTTTGTGG # Right flank : AAAGCATGACTATACGAAATAAGCGTCAAAAGAACATCAATCATTCTCTATCAATAATGACTCCAAATAAGCTTATGCGGATAAGACGATCTTATCTTGCATAAGCTTATTCTATTTTGTGCAAATAAAATGGCGGGATATGACAAATTCAATCGCATGTTGGGAATATATGAGATTAAAATGATATAATAGCACTAGATGAAATGTAATAGATAGTCTTTACGAACCATAATGGCTGCGGCCAATCTGGCAAGGTGTTTTTATGTTGGCTAGAAATCGGGGAGGTAGGAATACATCAATGACAAACAATATGAAGGACGTATTTTGGAGTATTCATAACAATTACAATTATCTGAACAAAATGATGGTTGAAGAAATGGACATTGCTTCTGAACATGGCGGCATAACCGGGAATTTTCGCGAGGAAATGTGGATGAAGTTATTTCGAAGCATCATTCCTCAAAAATACTCGATGGCGCAAGGAGTCATGATTATTGACT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 5 16036-15671 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 16035 30 96.7 35 ....T......................... ATACAAGTTGCGATTAAAAGCATGGCAGAGAGCTC 15970 30 86.7 35 ....T...C...T....G............ AGCATATACAAGAAAGAATCGTAGGTCAATGCTTC G [15953] 15904 30 90.0 36 ....GT..C..................... AATGTATCGAAGCCCCTACTGGTTTCACATTCTCGA 15838 30 96.7 38 ......................T....... CGATTACCAGAAGACGATGGTAAACGATTGGCTAGTTG 15770 30 100.0 40 .............................. TATCTGGGAATAACTCTTCTGGTGTAGAATCCAGCATTTT 15700 30 73.3 0 ....T...C.......A.G......TT.TG | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 90.6 37 GTTTAGAAAGTACCTATAAGGAATTGAAAC # Left flank : GGCTACAGGAGATAAGGCTCCTACAAGACCGCTTGTTCCGGATGGCAGGACTTGTCGCCATGTGTTCCGCTGCGGGACGACTCGGCATGCTGCATGTATTTCCGCTAATGTATCAGCATGCGCTGCAGGCTTTGGCCTCCAGCCAGCGACGCCGGCACGACCATAAAATCTCGGCAATTTTCTATTCCTACGACGAAGTCTGTATAGGCTGAAGGATAGGGGATAGAGGAAGTATTCTGAAATGCTAGATTTGTGGTAGCATTATAGTGTATATACTTTTATACTAGTGCTTGGTGTTCGTTGTGAATTTTTGCCGTCGACCCCCAATAGCGTATAAATCCCGGGGGATCGACGACAAATTGGAATATGGAGATAATAAGCGAGAATCGTAGATAGAATGTGAAAATATTCGATTTATTGTGTTTGTCTAATAACCTCTATATAGCTTGTGTGAAGTAGAGACATTTAGTCAAATTAGCGTAACAGCAGCACTTTTTTGG # Right flank : AATTAAACGATGCAGAAGTAGATGGTCTTGAGTTTGTGAAATAGAGGATTGTATATAGAAAATACAAAAGAGCTATTTAGGCCCTTTTCAGAAAAATCACATGTGCTGAATTTCGTTTCTTAGATATAGAGCATCTTTAAATCCTCTCAAGTAAACCGAAGGTTCAATAATATTTTGGAGGGATAATTGTACGTCTTGAAGAAGAAACATAGTGGGTTGAAGATCTGTAGGAATTGAGTCTTGTAGTTGTTGAATATATTGGTCACATTCAGTAGAAAGCTTTATGTAGTAGGCATTGCTTTTTGAAAGGTCATCGTACAATGATTCCAATCGATTTCGTATTAGTGGTTCTACCAATACTTCAAGTGAATCCAACATAATAGATCATATCCTCCTCTCTATTAACCTTATAGAGTTATAATATGACATTATAGGGTTAATTGCGAAGTTAATTATTAACTTTACAAGATGAAATTATAGCTGGTTTATTGTTTATCTTA # Questionable array : NO Score: 6.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAAAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 19742-19513 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBYF01000023.1 Paenibacillus sp. NAIST15-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19741 30 100.0 36 .............................. TACTTTGTGACCGTAGATGAAAGAGTAGTTGGTGAA 19675 30 100.0 37 .............................. TGCTTAACAGTGATCCCTCGTTTGGGCTGCTCGTCTT 19608 30 100.0 36 .............................. ATTGCAACGGTATCATCTGAACTGGATAGCTTTACA 19542 30 86.7 0 ..................C.A.G.A..... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 96.7 37 GTTTTGAACGTACCTATAAGGAATTGAAAC # Left flank : ATGGCAAGTGGCCAACTAACGAACGGAGCTGTAGATGCTGCCAATGCTGGACAGCTTGAAATGAATCTTCTCGCTTATCGTGCCGCCCTGCTCGGTGCTGCTGGATTTCTGCTCCTTGGCTTATGTGCCGCCTTCCGAATTCAAGACAGCGACGCCGCCGCGACCATGAAATCTCGGCAATCTTCCACTCCTGCGGCAAAGCCTGTAAAGGCTGAAGGATAGAGGATAAAGGAAGTATCCTGAAAAGCTAGATTTGTGGTAGCATTACAGTGTATATACTATTGTACAAGTGTTGGTGTTCGTTGTGAACTATTGTCGTCGACCCCCAATAGCGCATAAAACCCGGGGGATCGACAACAAATTGAAATATGGAGATAGGAAGCGAAAATCGCAGATTGAATGTGAAAATATTCGATTTATTCTGTCTTCTAATCACCTCTCTAAAGCTTGTGTGAAGTAGAGACATTTAGTAACATTAGCGTAATAGCAACACTTTATGG # Right flank : ATATTTCACTGAAGATCGAAAAACATTAAGGTATCAAGGTTTTTCGGGAGGGATAGTCGTCCAGCGTCGGCTGATAGTCTTGCTGATATTGAATCTACCAATCTCTTTGAGTGAACTATAAGGCAAGTGTAGTATAATCAAATCATGGAAAATCGATTACCTATTCAGGACATATCCTTAATCACTGGTCTTAGTTCTCATACTCTACGCTATTATGAAAAAATTGGTCTTTTAGAGGGGATTGAAAGGGATGAAAATGGATATCGTAAATACTCAAAGACCGATATTTTATGGATAGATTTTCTCATTAGGTTACGTAACACAGAAATGCCTATAAGGGATATGCAAAAATTTTCAGAACTAAGACATCAAGGTGATTCTACCGTGACTGAAAGACGAGAACTATTAGAAGCTCATCAAGAAAATGTTCTTAACCAAATTAGGCGACTAGAGAATAATTTAACCAAGATTAATGAAAAAATTGACTACTATAAGAAGTT # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //