Array 1 93198-92254 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAINBT010000011.1 Escherichia coli strain C4-9 c_000000000011, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     93197	    29	 100.0	    32	.............................	ACAATCCCACGCCGATAATCTCTATACAGCAA	
     93136	    29	 100.0	    32	.............................	GGCACGGAATTGTTATGCTGTTCCCCTGACCG	
     93075	    29	 100.0	    32	.............................	ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG	
     93014	    29	 100.0	    32	.............................	CGACGTTTTCTAATATCACCCAGCAATCAATT	
     92953	    29	 100.0	    32	.............................	ATTTCATCAAAGCATTAAGGGATGGAATAAAG	
     92892	    29	 100.0	    32	.............................	TCATGAATATGGGGAAAACGAACAATCTGTTT	
     92831	    29	 100.0	    32	.............................	ATGACCATTGGTGAACGCATCCGCTTTCGCCG	
     92770	    29	 100.0	    32	.............................	CCGACGTGGGGATTTACTGCCACGCATAAAAA	
     92709	    29	 100.0	    32	.............................	TACAGTTTCCATAAATTCACCTCGTTTATATA	
     92648	    29	 100.0	    32	.............................	AGTTCCCACAAACCTGGGTGCATCTCGCGTTC	
     92587	    29	 100.0	    32	.............................	ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA	
     92526	    29	 100.0	    32	.............................	CCAGCCGAAACAACGCCAGCAAAATCGACCGC	
     92465	    29	 100.0	    32	.............................	GGATATAGAGCGGGTACTCGAGCGAAGCGGGG	
     92404	    29	 100.0	    32	.............................	CCAGGACAGGCCGTGACGGTTGCCATTGAGTC	
     92343	    29	 100.0	    32	.............................	TTTTTGTTCTCTTCAAAACGCCGAACAACCAA	
     92282	    29	  93.1	     0	............T.....A..........	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.6	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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