Array 1 472503-473689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQJ01000006.1 Salmonella enterica subsp. enterica serovar Havana strain CFSAN024770 CFSAN024770_contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 472503 29 100.0 32 ............................. CAACCACTCCGGGAGCGGCTGATCGTCAGTTA 472564 29 100.0 32 ............................. GAACGTTCAGCGGTGCGTTTACGACGCTGATA 472625 29 100.0 32 ............................. TTTAACGCCAAAGCGAATCGCCGCACAGAGGT 472686 29 100.0 32 ............................. GCAGCCTAGAGATTGGGCGCTCCACTAGTAAC 472747 29 100.0 32 ............................. AGGACAGTGCGCCGGGAACGTTAGAGGAATAT 472808 29 100.0 32 ............................. TGGTGCCTGTTGAGACTTTCACGTTTCCGTTG 472869 29 100.0 32 ............................. CAATCAGATACTTATCCCTCGGAGATATCTGG 472930 29 100.0 32 ............................. TCGGTTATCTGGGGAGCGGACGGTTATTAATT 472991 29 100.0 32 ............................. GGATTCAACCTTTTGGGTGATGTGCTGATGCT 473052 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 473113 29 100.0 32 ............................. CGATCGTGAATAATTTCACGCGCCGGCACAGT 473174 29 100.0 32 ............................. ATGGGCGTGGGGAGAGCGATTATTAATGAGGT 473235 29 100.0 32 ............................. GCGTGCCACGCAGGGGATCTATCAGTTCGACC 473296 29 100.0 32 ............................. GCAAACACGCTCATAACTACGGCCAGAAATGC 473357 29 100.0 32 ............................. ATCACATCCTCCGAGCTTAGTGTCGCACTGGA 473418 29 100.0 32 ............................. GGAATATGAAAATTATTATTTTTGCAACTGCA 473479 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 473540 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 473601 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 473662 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490425-491859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQJ01000006.1 Salmonella enterica subsp. enterica serovar Havana strain CFSAN024770 CFSAN024770_contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 490425 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 490486 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 490547 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 490608 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 490669 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 490730 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 490791 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 490853 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 490914 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 490975 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 491036 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 491097 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 491158 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 491220 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 491281 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 491342 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 491403 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 491464 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 491525 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 491586 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 491647 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 491708 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 491770 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 491831 29 93.1 0 A...........................C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CACGCGCCAGCGGGGATAAACACGTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //