Array 1 4384914-4386893 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039169.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4384914 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 4384975 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 4385036 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 4385097 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 4385158 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 4385219 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 4385280 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 4385341 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 4385402 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 4385463 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 4385524 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 4385585 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 4385646 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 4385707 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 4385768 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 4385829 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 4385890 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 4385951 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 4386012 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 4386073 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 4386134 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 4386195 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 4386256 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 4386317 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 4386378 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 4386439 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 4386500 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 4386561 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 4386622 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 4386683 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 4386744 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 4386805 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 4386866 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4403466-4405325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039169.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4403466 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 4403527 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 4403588 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 4403649 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 4403710 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 4403771 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 4403832 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 4403893 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 4403954 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 4404015 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 4404076 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 4404137 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 4404198 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 4404259 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 4404320 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 4404381 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 4404442 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 4404503 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 4404564 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 4404625 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 4404686 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 4404747 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 4404808 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 4404869 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 4404930 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 4404991 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 4405052 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 4405113 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 4405174 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 4405235 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 4405296 29 96.6 0 ............T................ | A [4405323] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //