Array 1 20899-20007 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWW01000038.1 Listeria fleischmannii subsp. fleischmannii LU2006-1 c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20898 36 100.0 30 .................................... TTTCCCCCGTTCGGAATTCTAAGTAGCTAT 20832 36 100.0 30 .................................... TAAAGATACTACTTTAGGATTCACGCCTGT 20766 36 100.0 30 .................................... GAGAACAGTAAAGAAGGGGTATGTTTTGAA 20700 36 100.0 30 .................................... AATTTCCAGATATTTACAAGCAAGTGTTAA 20634 36 100.0 30 .................................... AAAGATGTGGTTATACCATTATCGTTGTCA 20568 36 100.0 30 .................................... TCCTCTGTTGTAGATGCCGCGCCTCGTTGT 20502 36 100.0 29 .................................... TCGTAAAAAAGGGATTGACTACATAGCAC 20437 36 100.0 30 .................................... TCTGGAGTTAAAGATTTACTCGACTATGGT 20371 36 100.0 30 .................................... AGGAAAGAGCAACTTTTAGAAGGCTGGACG 20305 36 100.0 30 .................................... AGACAACATTCACGATACATCAAGCAATAG 20239 36 100.0 30 .................................... TTGTTCGCCCTTATTACGACTCGAATACTC 20173 36 100.0 30 .................................... TGTTCAAGATGAAATTGTATACATGATGAT 20107 36 94.4 29 ..................................CA AACTTGATCAAAAAAATCAAGCTCGGAAG 20042 36 75.0 0 ...............A.......TT.C.CA..C.TT | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.8 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TCCACGACATCATCCAGATAAGATACACCCCGACGCTTAGCCAAATGTGTCAGAGCCACATAAATCTCTGATATTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTGATAAGGATTTTCGTTCACAATATCACAAACATCCATATCATGCGCCAGAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGACGACTTGTTCTCCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGCATCTAGGACATCACCGTTTTCAGCGTCTATAATCCCCCATCCTACAGAAGCAACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGTTATAATAAAACTAAGTAGTTTCTAAAAACTCATTTTGACGAATTTGAG # Right flank : TCCTAGAAAATCATAAAACCATTTGCGTCTCCAAAATCTAATTTTGAAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCACTTTATTAAAATGGCATTTTGAAATTGCCGAAAGGGTTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTTACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATGATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGCCCAAGTTGTTTATCATCGACTTGCATATTATCAAGGCCCTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCTAGGAAGTCATCGAGTGTCATGGAGTTTTCTTTCATTTTGCGCTCCATTTCACGCATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 26832-27263 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALWW01000038.1 Listeria fleischmannii subsp. fleischmannii LU2006-1 c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 26832 37 100.0 29 ..................................... ACTTTAGCCAAAGCAGATGGTGCGTTTAT 26898 37 100.0 29 ..................................... AGGGGATACAGGCGCTTTATTCGCTGTTA 26964 37 100.0 29 ..................................... TACTACAGGTGAATTTGAGTCGCTCAGCT 27030 37 100.0 29 ..................................... GTAGTTCTCGTCTTTATCATACAGTTGTA 27096 37 97.3 29 ....................................A GCACAAAAGAAGTGTTAAAGAGCAAGTGC 27162 37 100.0 28 ..................................... AGCATTGGCGAGCGTTCTCTACATTAGT 27227 37 86.5 0 ...........................T..C...TTA | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 97.7 29 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Left flank : AAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGCCAAATCGGATATGTTTATATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCTCATTCACTCGCGGATGGTCGTAATTTATATACACGTGTTTGTGCCTATTACCCAGATCAAACTATCCCTAGCTACAACGAATTTTTAGAGGCACTAAAAATTATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATCCAAATGAATGTAAAAGAACTGGTTTTAATCAAAATAATTAATGAGCTATTCCAGTACTTTGACTTTATTCCAGTAGCAGTATTACAACATAGCCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : ATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTATTCTCAGATATTCTTATGATTTCATGTAAATAAAAATGCTAGAAGCAGATTATTGCTGCTTCTTTATTGTATCCAAATAACTATTCCTAAATAGAACTAAAGTCTATCTACTATGTTCAAAAGCCTGATTTTATACAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTAATCATCAAGAGCTTCTCTAATTAAAATAAAGGAGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTACAAAGGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAACAAATCGCAAAGACAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAGGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGAAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //