Array 1 132181-129871 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMQ01000006.1 Photobacterium carnosum strain TMW 2.2029 Photobacterium_carnosum_TMW_22029_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132180 28 100.0 32 ............................ ATACCGAGACTCCTAGCGGGATTGAAAATGGT 132120 28 100.0 33 ............................ TACAACATGGTGAAAGACAAAACTGACCTTAAA 132059 28 100.0 32 ............................ CAATTCATTGTCATCCGAATCGCCAAAGACGC 131999 28 100.0 32 ............................ GATTCGCTATGTCGTATGTTACTGGTCTAGAT 131939 28 100.0 32 ............................ TGATGGCAAAACAATCATTCAGGTGACACAAA 131879 28 100.0 32 ............................ ATGTATTAAAAGAGCGCACACGACAAGATGCA 131819 28 100.0 32 ............................ AACACAGCTCTGGGTGAAGTTGTGCCACAATC 131759 28 100.0 32 ............................ CAATCAGTACCTTTATCTTTAAGTATTGCGCC 131699 28 100.0 32 ............................ TAGGTGTATACGACACAGGGGGTAATGATGAG 131639 28 100.0 33 ............................ AATAATACCCTTGAGCATGTCAAGCTTAACCAA 131578 28 100.0 32 ............................ ATGTCAAGCTGGCACATATCTGGAAGCTTAGC 131518 28 100.0 32 ............................ AATCACTAGCAACTACGGCAATACATTTCCAT 131458 28 100.0 32 ............................ AGATAAAAAAGAGATATGGAAGAAATTTATTG 131398 28 100.0 32 ............................ GATGGACTTTGATGATGACATCCCGTTTTAGT 131338 28 100.0 32 ............................ TGATTTCCTAAGCATGGATAATCCAGATAAAA 131278 28 100.0 32 ............................ CGGCACGAATGACCAAACCGTCGCATCAAATA 131218 28 100.0 32 ............................ AACTTCAACACCATCTATCGTAGTGGTACCAG 131158 28 100.0 32 ............................ ACCAGGGTAAACGTGAGATATAATTGTCATTA 131098 28 100.0 32 ............................ CGTCCCAAAAAAAAAGGCAACCCGAAGATTGC 131038 28 100.0 32 ............................ ACACGGCACAAGCTGACTTATAAGAACCATTC 130978 28 100.0 32 ............................ TTAATGTTCTCGTTTGATTGACACCAATAATG 130918 28 100.0 32 ............................ ATATAAACACGACACACATGTTACCTTTTTAA 130858 28 100.0 32 ............................ TGGTCCGTTAAAAAAGGCTTCATCTTTTTAAT 130798 28 100.0 32 ............................ ATTCGACAATTTTAAATGTTTCTGACGACCCA 130738 28 100.0 32 ............................ AAGATTCAAACGCACCACTACAATCTGAATAA 130678 28 100.0 32 ............................ GAACGAAGTTAGCAAGGTATACTCAGTCAGAA 130618 28 100.0 32 ............................ AAGGACAAATGAGCCATCCGAGCAACACTTGG 130558 28 100.0 32 ............................ CTAATGACAGCGGTGGCGAAACTAACCACGGT 130498 28 100.0 32 ............................ TAAACAACTTTAAACCATAGGAATTTAATGCC 130438 28 100.0 32 ............................ ATAAACATTCCAGAAAGGATGAAATCCCCAAT 130378 28 100.0 32 ............................ ACGTCAGATAGTCAAGTGCTACTCCAAACACT 130318 28 100.0 32 ............................ AAAACCATAACGAGTAAAATCGACGGTGAACG 130258 28 100.0 32 ............................ ATCATGGAAGAAACATTTAGAGGCATGAATGC 130198 28 100.0 32 ............................ CAAATTCAGTCTAACATCAGACGGCACACTTA 130138 28 100.0 32 ............................ CTCAAAGTTTATTAGATTTTGCTATCTCTGTT 130078 28 100.0 32 ............................ ATCCGTAGTTATGACGTGAGTTATAACCGCTC 130018 28 100.0 32 ............................ AGAGCTTATCGCGCCTGCAGGGAACAACTACT 129958 28 100.0 32 ............................ TTGCAGAGCCAGTGGGTGATCCTACTGGCTTT 129898 28 89.3 0 ........................ATT. | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTAGCTGAAAATAAGGGTGTCCCGCCACCACCACAAAAACCCACCAGCACCCCTGCTTTAGCTAATTCACGCATTGCCGCTTGAGTGATCGATGTGCCTGTTCCTAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAACGGTCACCAACAGTAAAAAACGCATTATATACATAGATACGCATAATGCGTTTAGAGTGTAATCACAAAAACCCTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTAAAAAAAGGGTTTTTCATTGAAATTTACTGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : CTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCTATAGCCCTTTGATGATAAATACGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTAGCTAATACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATCTCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCCGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATCTTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAACCGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAATGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 140761-143737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMQ01000006.1 Photobacterium carnosum strain TMW 2.2029 Photobacterium_carnosum_TMW_22029_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140761 28 100.0 32 ............................ TTACTTTTTGTGTGGTTATTTAAGTCGTTGAT 140821 28 100.0 32 ............................ TAAATACTCAACTTTTTTATGAAATGATGTTT 140881 28 100.0 33 ............................ CTCATTGCTTGCATTGATATTGAACTTATACGA 140942 28 100.0 32 ............................ TAAATGAAAAACACGCAAGATAAGCAGTAAAT 141002 28 100.0 32 ............................ AAGACTTACTACCAGCCTTGATCGTACTTGTT 141062 28 100.0 32 ............................ ACGTTAACAGAGCGGAAATGTTGATAGTGCGC 141122 28 100.0 32 ............................ AGCTAACGAAATGTGGATACTGTTTAAGAAAA 141182 28 100.0 32 ............................ CTCAGGAATATCCTCATCACTCATCCACAGTT 141242 28 100.0 32 ............................ AATGTTAAGGCTGAACAGTTATCAGATGAATT 141302 28 100.0 32 ............................ ATACCGGGAAGAGTCTTCATAAAAGGGTGCGA 141362 28 100.0 33 ............................ TCCAACCATACCTTAACGTTCCCCGATTCCGGT 141423 28 100.0 32 ............................ CCGACTGGACCACCTAAAAACGTCATAGCCGT 141483 28 100.0 32 ............................ TATCACCCTAGCTGTAGTACCAACACCAGCAC 141543 28 100.0 32 ............................ GAAAGGTGGAAGAGTTCGCAGGCGTAGCTGTC 141603 28 100.0 32 ............................ CAAAATAAACCTTGCTCCTTGTGAAGCTCAAT 141663 28 100.0 32 ............................ TCGCGCTTAGCGTCAGTAAGCCTTGTTAGTGG 141723 28 100.0 32 ............................ ATGAAATGAAACGCCACTTGGAAATAGTGAGT 141783 28 100.0 32 ............................ TCGATGCACACTTGACCGCAGATATCACAACA 141843 28 100.0 32 ............................ ATAACTATCTCCTTAGTTATCACTCAAACAAA 141903 28 100.0 32 ............................ AGATAAGATTGAAGTGCCAGTGATTGAGTTAG 141963 28 100.0 32 ............................ TGTTGTATATGTCTAAGCAGAACGAAACCGCG 142023 28 100.0 32 ............................ AGGACAGCAAAAGAAGAAGAACTAGAGATCAC 142083 28 100.0 33 ............................ ATGTTCAAGCAGGAATTCGGCAAGGATCCAATT 142144 28 100.0 32 ............................ AGTCATTCAAGGGGCAAAAGAGGGAGGTTTGT 142204 28 100.0 32 ............................ AAATCTAATCGGACGAACTTTTAAGCATGGCT 142264 28 100.0 32 ............................ GGTGCTGATGGCGCGGTTATAACTCACGTCAT 142324 28 100.0 32 ............................ TGGCGTGCCTTTGTTATCACGTCGGCGCTGAT 142384 28 100.0 32 ............................ ACCCCCCCATCCTGCTAAGCCCGCTCTTGTTC 142444 28 100.0 32 ............................ CGTTATTTGGGCTGAGTCCATACCCTTCTTAT 142504 28 100.0 32 ............................ TAAATTAGTTAAGCGACAAACAGTAAATGAGA 142564 28 100.0 32 ............................ TTGACACCCGCTCGTAATACTTCACCGAAACG 142624 28 100.0 33 ............................ AGAAAAAGATAGAACAGAATGGATTCTTGATGC 142685 28 100.0 32 ............................ TGCACTTGCTAATATGCCTGAAAAACCCACTG 142745 28 100.0 32 ............................ GACACTTTACGTAAACATAACCAGACTAATCC 142805 28 100.0 32 ............................ CATCAAAAGTTTTCGAAGAAGTTACAGGTAAA 142865 28 100.0 32 ............................ TAATACATTAAAGTAGCTAGTTAGATCTAAAA 142925 28 100.0 33 ............................ CGATATTCCCAGCGCTTCGACGTTTAGTCTGTA 142986 28 100.0 32 ............................ CGTCACGGCGTTAAAGGTAAGGTGTCCAATTA 143046 28 100.0 33 ............................ ATGTCACGTAATCCCCATCCTAAGCACATTAAA 143107 28 100.0 33 ............................ CAGCCACGGCGTCATTGGTTACGATTTTCTTTT 143168 28 100.0 32 ............................ AAGTTAAAAAGACTGCAATTTTGTTACTTGCA 143228 28 100.0 32 ............................ TATGACTACCAGAACACATTCAAGATGTGGGA 143288 28 100.0 32 ............................ ATTTCGCTAACCTCCTCTTGTCAGTTTTCTAT 143348 28 100.0 32 ............................ TAAGTGACTTATATATCTATAGTGTGTGTAAT 143408 28 100.0 32 ............................ AAATTAGAACTGGCAGTGAATAATCTATCACT 143468 28 100.0 33 ............................ AACTGCAATCAACGATGGTGGGTAAAACTAAAT 143529 28 100.0 32 ............................ ATTTTAAAATTGCAATTATGTAACGCCTCCTC 143589 28 100.0 32 ............................ GCTAAATCAACATCAAAATCATTACTAGTAAA 143649 28 96.4 32 .........................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 143709 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [143733] ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCGTGTTACGGCTATTATCGCTATTCCAAGTGAGATTAAGGGTTATCAAACTGTAAAGCGCGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCGATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCCATTCCTGATACCGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCTACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATCAGCAGATAAAAAAGGGGTAAAAGAGGGGTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTTAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACAGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGTTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAATTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTATTTGATAGGCTGAATGGATTTTTTGTGCACTTATTTGCTTATGGCGTATCAACTATGAAACAGGTTATGCCATTATATAAAGTAGAGGGGATATGATAAATTATGTTGAATTTATAGAGTGATAAAGGTTAAAAGAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //