Array 1 258173-249369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDUP010000002.1 Methanococcus maripaludis strain C14 Ga0416750_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 258172 37 100.0 37 ..................................... ATTGAAATAAATTTTCCGTCTTTTTCTCTTAATAAAC 258098 37 100.0 36 ..................................... AACCTGCCGAACCTGCAAAAATTGCAACTGCAAGAA 258025 37 100.0 37 ..................................... TTCGGTTAAAAATTCAAAAGCAAAGATAAATATAAGC 257951 37 100.0 38 ..................................... AAAGAAAGAGAATATATTATATATAGTGCGTTAGATGA 257876 37 100.0 34 ..................................... AAAAGATTTTGGATAATGGCCGCTGTTATAGAGC 257805 37 100.0 36 ..................................... AAAGGGCTGAAACGGACTTATTAAAGATGTTTAAAG 257732 37 100.0 38 ..................................... ATAATTTTCAGGGGTTTTGATGATGGGAAATTCTTATA 257657 37 100.0 37 ..................................... AAATTGTAAAAGGTGATATTAATGACTAAAAAACCAC 257583 37 100.0 37 ..................................... ACGGGATCTAACCCAGTTGCCTTTATTTTTTCAAGCA 257509 37 100.0 37 ..................................... TTATAATATATATACTTTTGATTATCATAGTTTTAGC 257435 37 100.0 38 ..................................... AAACGGTGGGAATATGGATATTGACGAAGCTATGAAAA 257360 37 100.0 34 ..................................... AAAAAGTATCTGCAAGACGAAATCAAAGAAATAA 257289 37 100.0 37 ..................................... TTTTCCTAATGATAAACCGCTGTTACCTGGTGCAGAG 257215 37 100.0 35 ..................................... ATTCAGCAAATCTTAACATTTTTCCATCTAATTTC 257143 37 100.0 38 ..................................... ATATCCCTCGTAAAACGTTATTATGCATAAATCATCAT 257068 37 100.0 37 ..................................... CTCTCCATAACAAAAACAGCCAAACCGAGCCACTCGA 256994 37 100.0 37 ..................................... TCCGCAGAATGTGAAGTAAAAAATCAAGGTGAGTAAT 256920 37 100.0 36 ..................................... CGGTGGCGGGTGTTAGCCATGAAACACTTTTAAATA 256847 37 100.0 41 ..................................... AGCTTTGATTTTGCAATTGCACCGCTTAGTCTCGTAAAAGA 256769 37 100.0 35 ..................................... TTATTTCGCCCACATTAAGGGTTATGTACTGTCTT 256697 37 100.0 36 ..................................... ACAGCGACACGACCACGAACACCGACAACCACTCAA 256624 37 100.0 34 ..................................... GACCATAAAGTCTATTAAATTCTAAATTTATCTC 256553 37 100.0 36 ..................................... ACTCAATTAGTAACTCTTTTACTTCCTCTTCTTCAG 256480 37 100.0 35 ..................................... TTCAATTTACAAGATACTATAATTTAATATACATT 256408 37 100.0 36 ..................................... CAAAAAAGGGAAAGAAATGGAGTTGATTTAAATGAA 256335 37 100.0 37 ..................................... AAAAATATTTCGTAGAATTAAAATTAATTCCTGAAAT 256261 37 100.0 36 ..................................... ACAAATTGTTAGATCAAGAAAACAGTAACATTCAAA 256188 37 100.0 34 ..................................... CCCACGCTTGGTGCTCCATCAGATACAGGTAAAA 256117 37 100.0 35 ..................................... TGGAAAAAGAGTCTGGTTCCAAAGAAAAAAAAGAT 256045 37 100.0 36 ..................................... GAAAAGTGGGGTATCCATCCTTATGATTGTTACATG 255972 37 100.0 36 ..................................... TTTAGGTTATGGTTGGACAGGAATTCAAATTATTTA 255899 37 100.0 36 ..................................... CTGCAACGTTTTCCATAGGTTTCACTTCGGTTTCAA 255826 37 100.0 37 ..................................... ATTTCTACCGTAATATCCCTCTCTTTTCTTTTCAATA 255752 37 100.0 35 ..................................... TTATTGCGATGTATTAACGCCGTAATCCAAAAACA 255680 37 100.0 39 ..................................... GTTCATTGAAGCACTTTTCGCAGTAATGATGGTTAAAAT 255604 37 100.0 36 ..................................... TAAAATTGATTGCACGTTACAGCCAAATAAAAACAG 255531 37 100.0 35 ..................................... ACGCAATAAGCGACAAAAACAAGGAATCTTTTAAA 255459 37 100.0 33 ..................................... ATAAGGCACAGGTATATCTTTGCCTTAACTTCG 255389 37 100.0 35 ..................................... TAATTTCTATTATATATAGTTATAGGTTAGGTTAT 255317 37 100.0 35 ..................................... TCCATATCGTTCCAATTTCAGAAACGGTGGTAGAT 255245 37 100.0 35 ..................................... TGGATATATAAGTATCCTCCGGCCGTATAATACGG 255173 37 100.0 37 ..................................... ATATTGGATTTTCTGCTTCTGTTTCATTAACTAAAAT 255099 37 100.0 37 ..................................... GTTCCACGTCTGCACTTACTTCGCTATCGCTTGAAAT 255025 37 100.0 35 ..................................... CATCCATTAAGGACTTATTTTTCAGAAATATTAGA 254953 37 100.0 39 ..................................... TTTCACGTCTGATGAAATCGCACAAAAAGCCCTCGAAAC 254877 37 100.0 37 ..................................... ACTCTTTCTGCATTCTGCCTTGATATTTCTTCATCAA 254803 37 100.0 38 ..................................... AACGATATAACGTATTGGATGCTGAAAATTCAGAATTG 254728 37 100.0 36 ..................................... AAATTAGAAGAAGCAGTAAATAAAACTGGAAGAAAA 254655 37 100.0 35 ..................................... TGAAGGGGACATTGTAAAATGGGGGCACATTGAAA 254583 37 100.0 37 ..................................... AATATAGAACTAGATTAAAAAAAATTCTGGAAGCAGA 254509 37 100.0 36 ..................................... AAAATTTCCCATTCAGTATTATTAGAAACATAACCC 254436 37 100.0 36 ..................................... AACAAGGGTTTAGGGGGATTTCATGATTTTAGAAAC 254363 37 100.0 35 ..................................... TTCCTGGTGTTGGTCCTTTGGTTGCATCTGCATAT 254291 37 100.0 36 ..................................... TAGTTAGGTTTAGATATATCGTTGCGAACATGTATT 254218 37 100.0 35 ..................................... GGTAATTGGAAGTTACGATAAGTATTATGGATATT 254146 37 100.0 36 ..................................... TTGAAATAAACTTTTTTATCCCCTAAACCGATACTT 254073 37 100.0 34 ..................................... ATTTCTTTGCTGCAAAACCAGGTGTAATCATTTT 254002 37 100.0 36 ..................................... TTATTAGTTTGAAAAAAATATATACTATACTTTACT 253929 37 100.0 34 ..................................... ATTTAGCAAAACTCCACAGGAGCGGAGAAATTAA 253858 37 100.0 36 ..................................... ATAGTCATAACAATGTTTGAAGTAGCACCGTTTGCA 253785 37 100.0 34 ..................................... ATTTAGCAAAACTCCACAGGAGCGGAGAAATTAA 253714 37 100.0 36 ..................................... ATAGTCATAACAATGTTTGAAGTAGCACCGTTTGCA 253641 37 100.0 35 ..................................... ATCCTTTAATTTCTTCATTCTTTTCTTCAACGGTT 253569 37 100.0 36 ..................................... GAGGAAACAAAATGATTTCCTCTTCAAACACTGTTC 253496 37 100.0 34 ..................................... TTAATGAATTGGGGTACACGTCCTCGTTAAAATT 253425 37 100.0 37 ..................................... AAGCTTCGTTGAACTCTTTTGAGTTGTTTTGAATGAA 253351 37 100.0 35 ..................................... TTACAACAACAAAAAATAAGAAAAGAAGGTCATGG 253279 37 100.0 37 ..................................... CTTAACATTTTAGAAGTCGTTTTCTCGTTTTTTTGAG 253205 37 100.0 34 ..................................... CGGTGGCGGGTGTTAGCCATGAAACACTTTTAAA 253134 37 100.0 36 ..................................... AAGCCGTACTTAGGAAATGGAACCTTAAAAAGCGGT 253061 37 100.0 36 ..................................... GATGCTTGTCTGTTTCAGTGTACCATGCTTCAAGAT 252988 37 100.0 37 ..................................... GTTTCCCCGAAAGATAATTTCTTCATCCAAAAATCAT 252914 37 100.0 37 ..................................... AAATTTTCTGGGCTTTCGTTGGTTTGCATAATTTGAT 252840 37 100.0 35 ..................................... TAATTTATTTTGATGTTTTCGATGTTTTAGACGGT 252768 37 100.0 35 ..................................... ATGACTAACTGAAAGGCTTTTTGGCCTTTTTTCTT 252696 37 100.0 36 ..................................... AACAGAATTTCAATAAATCCATCATTAACGTTTGCG 252623 37 100.0 37 ..................................... CCACTTTTTCAGATTGCAAATTATGAATAATACATAA 252549 37 100.0 38 ..................................... ATTTTCTGATTATCATTTTTTCTCACCTTAATTTAAGA 252474 37 100.0 36 ..................................... AGTCAATATTGTAAAGCAGTATGGCTCGGGGGAATG 252401 37 100.0 46 ..................................... TTTAGCAATTTTTCGCTACCGTCTAACACGTCGAACGTGTCGAAAA 252318 37 100.0 34 ..................................... TTTCTAAATTGTCAAAAGCAGTTATAACCATATA 252247 37 100.0 37 ..................................... GTTGAATCACCACAAAGTAGTCTGTGAGGTCCAAGGA 252173 37 100.0 37 ..................................... TCTGTTTTGGTAACGTTTACTTCCGTATTAACGTATT 252099 37 100.0 35 ..................................... ATGCGTGTATCGGTCAAATACTGATAAATTATATG 252027 37 100.0 35 ..................................... TAGCAAGATTATCTATTGAAATTTCCGAATAAGTT 251955 37 100.0 36 ..................................... TTACATGTAGGTGTAGGGATTGTAGGGGCATCTATG 251882 37 100.0 35 ..................................... AAAAAAGGTGAAAATATGACTGTATTAAAACAATG 251810 37 100.0 35 ..................................... GGTGTGGTTATGCGTACGCATAAAAATATATTAGT 251738 37 100.0 35 ..................................... CTGCAATCATGATTTCACCAAAAATTAAGAGAATT 251666 37 100.0 36 ..................................... CGAACGGCTTCAGGAGATTAACATCGTTGAATGAAG 251593 37 100.0 35 ..................................... CGAAATAAAAGGACACGAACAGGTAAAAAAAGCGA 251521 37 100.0 37 ..................................... ACGAGCTTCAAACGATACTTAAGCCTTACGCAATAGA 251447 37 100.0 35 ..................................... TGTTTCCCTGTAGTCCCCCCGATCCAACTCGATAC 251375 37 100.0 35 ..................................... TTGATTAATGCCCCTTCGGGTCCGGAACACTCAAA 251303 37 100.0 37 ..................................... TCCTTTCTAAAAAAGGATCAATTTCAATCGGTCAGTT 251229 37 100.0 37 ..................................... GCACTCGCTTTTGGGGCATTTGACATAACGATAACAA 251155 37 100.0 38 ..................................... GCATTTTCACAGTATTCAATGCTCGCATGTTCAATAGT 251080 37 100.0 36 ..................................... GTATTTCCAGGGGAGAGTTACTATGTTAGAAGGATT 251007 37 100.0 35 ..................................... TAACTATCTGGCATCTAGAGGATACACTCGACCGG 250935 37 100.0 37 ..................................... CCCCATTTGCAGATTTAAAATTGCAGATTATTAAGTT 250861 37 100.0 36 ..................................... AACTACCAATTGAACAAATTTTCGAGGATGATTCAG 250788 37 100.0 35 ..................................... ATACTTGATGAAAGCGTTTCTATCCCGCATATCTG 250716 37 100.0 36 ..................................... GGATCGTAGATGCGGTCCGAGATAGTACTGGAAAAG 250643 37 100.0 36 ..................................... CCTATTACCTCGCAGTCGTTTATATCGTCTCCGTTT 250570 37 100.0 35 ..................................... AAATGTTACTCAACGAATAAAAGGTGTAGGGGAAT 250498 37 100.0 35 ..................................... GTTGGAAATATATGATAACTCACAGATGATAAATA 250426 37 100.0 35 ..................................... AAGAGTTTAACAATGTAACAACTAAAAAATCGATT 250354 37 100.0 35 ..................................... TTAAATAATGGGTTATTTAGGGCCTCTTCTGCGTT 250282 37 100.0 37 ..................................... CAACAAGTACTTGACGAAACAAACCCAACAGCTTCAA 250208 37 100.0 37 ..................................... TTCTGATCCAAAACTTTCACGTTTGCATTTGCACCGC 250134 37 100.0 38 ..................................... GAAAAAAAGTATCCTCGTTCAATGAGAAGAATGAAAAG 250059 37 100.0 36 ..................................... TAGTTAATACGCACCGAAATGCCTGTACCCAATTTT 249986 37 100.0 36 ..................................... TGCCTGGTGATATAATGAAGAAAAATAGACCTGGAG 249913 37 100.0 34 ..................................... TAATTGTTACCAACTTCTTTTTTAGCTTCTTGAA 249842 37 100.0 36 ..................................... CCGCCCCAACTGCGATACGTTGGCACTGGCACCATT 249769 37 100.0 35 ..................................... AAATAAAGTAAGTATTAATCGATAACAGACATAAT 249697 37 100.0 35 ..................................... CTCAATGGGTTTTTGGCCAGAATAAGCATGAAAAG 249625 37 100.0 38 ..................................... GTTATCGTCATTGTAGCATATATGTCTGTTGCAGTAGC 249550 37 100.0 36 ..................................... CCTTACCCCTCAAGAAGCAAAAGAATTTGGGATTGT 249477 37 100.0 35 ..................................... AAGCCGTACTTAGGAAACGGAACCTTAAAAAGCGG 249405 37 86.5 0 ...........................A...C.T.GT | ========== ====== ====== ====== ===================================== ============================================== ================== 121 37 99.9 36 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : GAAATAGATCTAACTGAAAAAGATATCCATAAATTAAGTAAATATTTGGAAGAATTCAGGAAAATATTAACTGGATATTATCCAAAAGCAACGTCATATAAACAAAGATGTACAGACTGCTGTTATAGAAATATTTGCGTAAAATAATTTGTTCCTTAAAAATTATCGGGCGTTTTCCAAACGTATTTTAGTTATTTGAAAAATCAAAATAAGATTTAAAACGATATATTTTAAAAATATCTGTAGATTTTAAATATTTTTAATCATAGAAAATAAAAATAATAGTAATACTCGGCATAAAATAAAATAATCTGTAAATTTTAATTTAACCAATATTCTAATTTAAATAACGTTTAAAAAGTAATTATATTATATGAATAATCCAATGAACTAATTTAAACGGATATTTATTTTTTGTTGAGAAAATGAATAAGCAAAGTACATATAATGGCAGAATCATAAAACTACTTCGTTATTCTAGAGTTTTTATCACATTATCT # Right flank : ATAATAAAATCTAGCTGTTAAGTGGTCAGTGTCTACGGGTAATCGAACCAAACTTATTTTATATCCTATCCGACCAACGACCACATGAATCCCTAAGAATTTCATCGCTTAGGATATTTTCGAGCGAAGCGTCCCGAAAGGGCGAAAATTCCATATGCGGTGAAATTCGACCTCTTTTGGTGTTTAGGATATAATATCCTAAAAAATAATTCATACCGCCCTAGGCACAAAATGTGCGAAAGCACCACTTTAGCCGTAGCACGGCACCACTGGTGTCGGGCGTGTATATTTTTAAAAATTTAGAAAATAACCCTGCGCGTTAGCGCTATTAATTATACAGAAAAGTTGTAGCAAGAAAAATGCAACGAAATTAAACCCTGCCGTTTTAATTCTTTAATTATTTAAAAAAGCCAGATTATAGATATTTTTTAAACGATTTCTTAAAAGTTTTAAAATTTTAATTTAACGACTCACATCGAGTTTGGTGTCAAAAGAACCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //