Array 1 59839-60022 **** Predicted by CRISPRDetect 2.4 *** >NC_016586.1 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 59839 37 97.3 37 .......T............................. CATACAGGCTTGGTCATGTCGGGCTCCGGGAAAAAGA 59913 37 100.0 36 ..................................... GTTCAGCCGCCGTGGGGGGAGATCAGCGGGGCTTTC 59986 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAAC # Left flank : AGCGCCCGCTCGAAGGCGCCGCGCAACCGGCCGGCAAAGGCCGGATCGTCGACCAGCGCCGCCGCGTCGGCACAACGCAGCGTCACCGTCTGATGGAACCAGCCGGCGGCCAGCTCCTCCAGCGGCACCGTCGCCGCCGGCTCCATCAGACGGCGGTCGAGCGGCGGGGCGGTGTCTGCATGGTCCGGCACGGCGATGGGGCTTTCCTGGAATGGCACGCGGTGGCTGTGTCTTGCGCCGGTTGTACCCCTTTCCGGGCTATCCGGCGAGGAGGAAGGGCAGGCGGCGGGGTAACGGAATGATGCGGGACGGGGGTGGGATTTTGGCGGTTGTTTCAAATCTGGTGTGGAAGAGCTGGTAGACCATTGAAGATATTGGGATATTGGGCTGTTCATTGGGTGGTGTTAACCACTTTTCCGGGATTTTGGAGATTTTATCCACACCATGCGTGGAAACCGTTGGGAATTTTCCCGTTGAATCAAGCGGATGCGAGGGATACC # Right flank : CGCTCGCGTGATTTCGTCGAGGAAGATGATCCCCCCGGCCGAGAGCCAATTGTCGCGGCCGGCTTCCTCCCCCCTACAGCAACCAGAAATCCTGCTGTTCCGGCACCGGGGCGCCGCCCAGCGCGGCGCTGTGCGCCAACCCGTGCGCCGACAGGGCGTACATGCGCAGGCTGTCGCGCGGTCCAAGCTCCTTGCCGGCGCGGGCCAGAAGCGCGCGGGCCTGGGGTTCGGTCAGCCGGGCCTCGAACACGCTTTTCTGGACGCGGACGCCCCATTCCTCCAGCACCGCCGAAACCCGGCGGCGGCGGCGGTCGTTCGCCACGTCATAGCAGAACACCATGACCATCGGCGTCTCGCTCATGCCCGGCTGCCCCTTCAGTAATCCATGACATAGGCGCGGTACGGCTCGCGCCCCTGGACATGGGCGGCCAGAGCCTGCGCCTGGAACCCGATCAGCCCGCGCCAGGTCGTGCGCTTGCCGTCGCGCGGGCTGGCCACCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGCATCCGCGTTCGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : NA // Array 2 62637-63046 **** Predicted by CRISPRDetect 2.4 *** >NC_016586.1 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 62637 37 100.0 38 ..................................... ATACGCAGCAGCTTCGGTTCGTTGAGTTGGAGTTCGAC 62712 37 100.0 42 ..................................... CCTTGGGCGGTGTTGGACGAGCCGTTGACGCCGGTGTCCTGC 62791 37 97.3 37 .......T............................. GGTCGGGGCGGTCATCGGGTGGGCTCCTTCGGGAAGA 62865 37 97.3 36 ...........A......................... ACGTGCCGTCCGTGGTGTGTGTGGGCGAGGCTGCTG 62938 37 97.3 35 ..........G.......................... GCTCGGTCGTTCAGTTCGTTGTGGTAATCAATTGT 63010 37 75.7 0 T..A..T.A..C...................A.C.TG | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 94.6 38 GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC # Left flank : CCGGTCGGTCACCGGCGGAATGGCGAGCGGGCGAAGGGCGCCGTCCGGCTTGGGGATCGACAGCCGCCGTAGCGGTCCCGGCCGGTAATCGCCCATCCGCAAGGTGCGGTGCAGAGCCAGCAGCCGCGAGGGCGCCGCCTCGGCGAAGCGCCCGACCGTCAGCCCATCGCCCCCGGCCGCCCCGGCGTTGCGCAGCACCCGCCCCCAGGCGCGCTCCAGCGTATCGAGTCGCGTGACCTCCTCGAACAGATCGGCGTTGTCGGGCGGAGCTGTGGGCATGGCGAGGCCGCGCGCAAGGACGTTGCGCGGAGGATCGCGGTTGTGGATGTTTGTGTCAAGTTTGGTGTGGAAGGATGTGTAGAACGTTGATTGCTATCGGGATTTGGTGTGTTTGATGGTGGATCTTAACCAAAAAATAGCGTTTCCGGCTTTTTTATCCACAGGATGCGTGGAAAGGCGGCTGAAAAAGCAACTTGAATCAAAGGACTGCGAGGGGCACT # Right flank : GTCTTGGATCGACCGTCCCGCGCAGGCGGCGCGATCCGGCCGGGCAACAAACTCAGGTCAATCGCGCCTTTGGACGTGATGGCCCTTCCGACTAGCCCCTGGGGAACAGGTCATGAGGAGGCCGGAGGCGTTCCAGATTGCGAAGCGGAAGGTCTTTCCCGCGGTCCGGACGCAAAGCCCCTCACCCAGCCCTCTCCTCGCGGGTGAGAGGGCCGACGTCGCCGCTTGCGCGGCTTCGCGGGAAGCATCGGGGAGCCGGTCGGCCCGGATTCCGTTCAGCCGTGCCGTCTTGGCCGCGTCCGTTCGCCGTGATCACTCGCTTTTGACGGAGACCGGCTTGACGTAGACCGGCAGGGGTGGCGGGTCGTCCTGACCCTGCGGCAAAGCGAGGGAGGGCAGGGCGCTCAGGCCGCCCGGCCGGTCGTTCTCCTGGAACCAGCGGAAATTCTCAGCGCGCGACCGTGGCCGTGGGTGGCGTTCGCCGGGCTGGGCCGCGCGGG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCGGTGTCCGCGTTTGGGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 20746-23327 **** Predicted by CRISPRDetect 2.4 *** >NC_016622.1 Azospirillum lipoferum 4B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 20746 37 100.0 37 ..................................... GCCAGACGGCGGAGAAGCTGCGCGGGCTGGAACGCAC 20820 37 100.0 38 ..................................... AAGGCGATGCGGCCCAGGGTCTGATACGTCTTGATGTC 20895 37 100.0 39 ..................................... AACATCGTCGGCATATGGACGATGACCGGGACGATCGGC 20971 37 100.0 36 ..................................... CGCGGAGGAAAGCGCGGCGATCTACGACTGGAACCG 21044 37 100.0 40 ..................................... ACCGTCTGGGGAAGATTGGGCATCGGCGCCAAGCCCGGGA 21121 37 100.0 37 ..................................... AGCCGCTTGTCGCCAGCATTGCCCAGCTTGTCGCCGA 21195 37 100.0 35 ..................................... TACAACGCCCGCCAGATCGACGTTCCCGATTGGGT 21267 37 100.0 39 ..................................... AACTTTATTGCTTCGGGATCTCCCCACAGGGCGCCGAAC 21343 37 100.0 37 ..................................... AAACCCAGGCAGCGCTCGATCATGCCGGCGAACTGGT 21417 37 100.0 39 ..................................... GAACCCGCGTCGGCGAATAGGGAATGCTGCCCGGAAACG 21493 37 100.0 37 ..................................... GCCGAGGCGCGCGACAAGACCGGCCGGACCTGGGCTG 21567 37 100.0 38 ..................................... CGGTCGGCGATGGTTTCGGTCAGCGCCTCCACCTCCGC 21642 37 100.0 35 ..................................... GACTGCAGGGTGAGCGCATCCCAGATGACGATGCC 21714 37 100.0 37 ..................................... AGGTGAGTCAGCTTGGACACATCCTCGACATCGCCCT 21788 37 100.0 39 ..................................... GATGAAGGCGGCGAACACCGCATTCACGACGGCGGCCTG 21864 37 100.0 38 ..................................... TTCACGAGGTCGCCGCCGCCGGCAATGAAGCGGTCGGC 21939 37 100.0 41 ..................................... TGCCCTTGGGGAAGGCGAACGAGGCCCAGACCACCAGACCG 22017 37 100.0 38 ..................................... TAGAAGCTTTCGGCGGCGATGCCTTTCCAGGCCGACCC 22092 37 100.0 38 ..................................... TACTGCTCCAGGCTGATCTCCGGGTGCTCCTCGGCGAG 22167 37 100.0 41 ..................................... CGATCCGGCAGGATCGACAGCACGACCGCGCACCCCCACAG 22245 37 100.0 38 ..................................... TCGATGTCCTTGGCGATGTTGCCGAACAGCTTGGTCGG 22320 37 100.0 38 ..................................... GGGATGTCGACGCGCTGCCATGCCGATGGATCGGGGTG 22395 37 100.0 38 ..................................... TATCATGAGAGGACCACTCATGAACGAAACGAAAAGGA 22470 37 100.0 39 ..................................... ACCATCGGCGGCGCGGTCCTGAAGGCGGGGGCCGGCCTC 22546 37 100.0 37 ..................................... ATCGAGCACATCTCCTCCGGCCGCGACTGGGACCTCG 22620 37 100.0 37 ..................................... GGTTTCGAACTGAACCTTGGCGAAACGCAGCGCCCCG 22694 37 100.0 36 ..................................... AAAGACGGAACGGCGCAGATGGCAACGCCGGTGGTT 22767 37 100.0 38 ..................................... CATGATTTCTTGCGCCACACCCGCAGGCGCCACGCGGC 22842 37 100.0 38 ..................................... AACGCGACGGCGGTCTCGGTCAGCACCACGTCGATGGT 22917 37 100.0 39 ..................................... TTGTCCATTTCGACCAATTTGCCCATCGCCTTGTTCGGG 22993 37 100.0 38 ..................................... GTGTCCGTCCGGCCGGTCGGCAGCCAGATGGCGCACGG 23068 37 100.0 37 ..................................... ACGGTCGGGGTGCCGAACTTCTCCGCGAAGACCAGCC 23142 37 100.0 36 ..................................... CGAGCGTCAACGGGAGATCGTTCGGCGGCTCGACCG 23215 37 100.0 39 ..................................... AGGAGAACGCCGACGGTCACCGCCGCGCCGATCAGCGGT 23291 37 89.2 0 .....................C.......T.....AA | ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 99.7 38 GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC # Left flank : GCCTCGCCATCCTCGGCCGTCCGGAGCCGGAACGCATCAGCCCCGCCACCCGCGCCCTGCTGAACCGCCTGTCCGGCCCGCTGGCGGCGGATGCCAGCCTGTGGTGGACCCGCGGCGCCGGGCGCGTCGCCCCGTCGCTGCTGTCCTGTTCCGGCCTGCCCGCCGGCCCGCGCCCGACCGCCTTCCTCGACGGTGCCTGGAACCGCTGGGGCTGGGAGAATGCCGGCGAGGGGTAGGGAAGGAGCCGCTGTCGCGCGCTGGTCCCTGGCCCGAGCCTTATGCTACTCTCGCGTTTGCCGCCCGCCCGCCCGTGCGAGCGGTCCGGCACGCGCGAAAACCCCGTCACCGCTCGAAAATGCGGAGCCGTTGTTTTCGCTGGGATCTTTGACATCGTTCAGAACGAAAGCGGACCAAAAAACCTGTCCATCCGGACAGCTTCCCCCACCGCTCGAATCCGTGGCGAATCACCCTTGTTTCCTAGCGGGTTGAGAGGGGGGGCA # Right flank : AGCTCCCCGAGGGTCGTGTCGCCACAGCTTCGCTCGGTCGTCTGCGGCGGGCGCCGCTCTCGGACCCTGGCCGGGAGTGTGGAGCTGTTCTGGCCGGACGCTGGCGTCTGTGGTAGGAATAAATGCCAGAACCCCAACCATGGAGTTTCCTCGCATGGTCCCCGTCCGCCGGCTCTCCCGCCGCCCGCCGCCCCGGCACCGCCGTCCTGCGGCACCGCCGCTGCGGTCGCATGTTTCATCCCCTGCGGCCGGGAAACCTCTTCCATCCCGGCAGCTTGACGCCGGGCGGCCGGTCCGGTGAACAGTTGAACAGGGTGGCCGGAACCGTTTCACGCCGTTTCAAACGTTCCATTCGCAGAAGCGCGGCCGGCCGGCGCGGCCCGCTGCCCGGGGGCGGATCGAAAGGCTGTAGCGCGGCGGCAATTCCCGGTATGGTGCGGCGATCTTTTCGTGTTCCCGCCGTCCCCCGTTCCCGCCGCCCCCCGTTCCCGCCGTCCCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGAGCAGAAATGCTTGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1897485-1902871 **** Predicted by CRISPRDetect 2.4 *** >NC_016622.1 Azospirillum lipoferum 4B, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1897485 37 100.0 35 ..................................... TCGCTGTCCAAGCAGATGCAGACCGAGGTCGGAGA 1897557 37 100.0 38 ..................................... GAGACGGTGGACCTGAACAGCCTCAATATCGTGGGTGA 1897632 37 100.0 39 ..................................... TTACCCGGCGCGGGGCCGGTGCCCCGGCCCCGCGCCGCC 1897708 37 100.0 41 ..................................... GCAGTTGGCGTCACGATCGTCCGGATCCGTGGGCAACGCAC 1897786 37 100.0 37 ..................................... GAGCGCAGCGCGATGACGCTCAATCAGGTGAGCCAAC 1897860 37 100.0 38 ..................................... ACCTGGGCCGGGTCCAGCATGCCGTATTTCGCCGTCAG 1897935 37 100.0 40 ..................................... TTGTTGAGGGCGCTGAATGCCTCGATGTCGCGGGTGGCGC 1898012 37 100.0 36 ..................................... GTCACGCGAATGACGCCCGTCCAGTCGGTGGAGCAG 1898085 37 100.0 38 ..................................... GTCGACGCGCAATGCCTGTTTCTCGCCCGCCAACCGTT 1898160 37 100.0 37 ..................................... TGTTAGTCGCATTAGCGACCCCGGATACCCTCAATGC 1898234 37 100.0 37 ..................................... CCTCAACGACAGACAGTCCATCCCCGGCGGCGGCATT 1898308 37 100.0 35 ..................................... AGGAAACTCGTCAACGAGGGCCGCGTCACGTCAGA 1898380 37 100.0 35 ..................................... GTGACAAGCCAACTTTGGAATATTGGCCGGCCATT 1898452 37 100.0 36 ..................................... TACTTGGTGAGGAGGCGCTCAGTCGCTGCACTCACG 1898525 37 100.0 37 ..................................... AGTGATCGGTCTGGCGCAAGATGATGAAGTCATCGGT 1898599 37 100.0 38 ..................................... GCCTCCGGCGGCGGGCCGACCATCTCGCCAACGCGGCG 1898674 37 100.0 37 ..................................... ACGAATCCGGATCCGCGCTCTGTACGCCATGTGAAGG 1898748 37 100.0 37 ..................................... CATGGAAATCGCCGGGTAGACCTCAGTCCACGATCCC 1898822 37 100.0 38 ..................................... AATGCACTCCCGCAGATCGGCGATAGCCCCCCGCAGAC 1898897 37 100.0 39 ..................................... TTCCACCGTCCATGGACGGTTGGCGTCCGCCTCGCCCCG 1898973 37 100.0 40 ..................................... CAAGCGGAGAGGAGTTTAGCCCTGTCGACGTCGGTTGCCA 1899050 37 100.0 39 ..................................... AAGGATCGGTATCGCGCAGTTGCTGAGCGCCCAGTCGAG 1899126 37 100.0 41 ..................................... ATGGTGGCACCGGGGCGCAGAACATTGTCGGCGTAGAGCAC 1899204 37 100.0 36 ..................................... GTCACCGGCTCGATCAGGGCCGGCTCGTCCCCGTCC 1899277 37 100.0 37 ..................................... ATGTCTGACAGCCAGCACCGTTCGGCCGACGTCGCCA 1899351 37 100.0 36 ..................................... CGGCACCGGCGCCGGTCAGCGCCGCACCATCGCCGC 1899424 37 100.0 38 ..................................... GGATGCTGCCATGGCCTGCCGCTCCAGTGTGTGGGCGT 1899499 37 100.0 38 ..................................... AAGGTCTCCACCATGCACAGCGGCATAGACCTCGCTGC 1899574 37 100.0 41 ..................................... TCGCAACAACTGTCCGTGAGTGTCTGTATGGTGGTGCTGCG 1899652 37 100.0 36 ..................................... CACACAAGGAAACCAAAGACGCACTGTGGCGGCGGG 1899725 37 100.0 38 ..................................... TCGCTTTCCGGAGTCTGTGCCATCTGCGGACGGGCAGG 1899800 37 100.0 37 ..................................... AACTTGGCCGATCAATGCGCGCCTGGATGTCTGCGAT 1899874 37 100.0 38 ..................................... CTCCGTGGAGCCATTCACCGCCCGTCGCCGCGGCGTGC 1899949 37 100.0 38 ..................................... CCTTGCTGGTGACGTGAGCACCTCCAGCATAGGGCAAG 1900024 37 100.0 37 ..................................... GCACCTGGGCGAGACGGGCAACAACCTGCAACGCCTG 1900098 37 100.0 39 ..................................... CAGCCGGGACATCGACCACGACACCGATAATATCTCCGC 1900174 37 100.0 36 ..................................... AAGCGTTTGCGGCGCCCGTCTTCGTGCGTGACGATC 1900247 37 100.0 37 ..................................... AGCCAGATCGGCGGGGGCGAAGCCCTGAGCCGCGCGG 1900321 37 100.0 37 ..................................... GCGTCGACGATCAACTCGAACTGGCCGGGGTACGGGT 1900395 37 100.0 36 ..................................... AATACCCTGGTAGCCAGCCCCGGTTAGGCGGCGTTC 1900468 37 100.0 37 ..................................... CTCGGCTCCCGGTGGAGGTGGAGATGCGGCGACCATG 1900542 37 100.0 37 ..................................... AAGGAAGCGGAGACCAGACGGGCCGACCAGATCGACC 1900616 37 100.0 41 ..................................... TACACCTCGACCGGTGCGCCGAAGATCACGGGGACCAACGC 1900694 37 97.3 36 .........A........................... AAAGATAGCCGCGCAGATGATCTGTTGACGCAGGCG 1900767 37 100.0 37 ..................................... GCCCACATGAACGCCCTGCCCGTTGCGGCCAAGGCCA 1900841 37 100.0 36 ..................................... TCGCTCATGACGATGGACTGCGTGGCGTGGCAAACG 1900914 37 100.0 36 ..................................... CACCTATGGGTGGAATGGTGGCGGTGAAATAACGCG 1900987 37 100.0 36 ..................................... GTGGATCAGGGTGGCGGCTTCGTCGTTGCAGTAGGC 1901060 37 100.0 38 ..................................... CTGATACCGGCGGTGTAGACCTTGTCGTTCAGGCCCTT 1901135 37 100.0 38 ..................................... GATCCCATCGGCACGACCGACGATGCGGGGAACTGGTG 1901210 37 100.0 37 ..................................... CAGAACCCGGCCCAGCCACTTCACTTTTTCCAATAGG 1901284 37 100.0 37 ..................................... AAGTTCGAGCACAACGTTGACGGTCTGGTGCGTGGCG 1901358 37 100.0 38 ..................................... ACGCGCTGGCCCGGCGCCTGCGCGGCGATGAAGCCCTG 1901433 37 100.0 36 ..................................... GGCCTGTCGATCGACGCCGAGGGCAAGGCCAAGACG 1901506 37 100.0 37 ..................................... TGCCCAACGGTGGCACCCCGCTGTGTCGCCATCGCTG 1901580 37 100.0 37 ..................................... CGCCCTTCCGGTAGACCTCCCGACCCTCATTCCCGTC 1901654 37 100.0 35 ..................................... TGCTCCCAGACGATCGAGGTCAGCGCGTGGCAGAC 1901726 37 100.0 37 ..................................... TCGATCTCCGCGGCCGACGTGGTGCCCTGCCAGAAGC 1901800 37 100.0 36 ..................................... GATTTGGCCAAGGTCACCAGCGATCCCGAGGCCGCG 1901873 37 100.0 36 ..................................... AAGCACCATCCGCGCCGGGGCCGGGTCGACCGCTTT 1901946 37 100.0 35 ..................................... GTGCCGTGCTCTGGCAACTCGACGCGGACCCGTCC 1902018 37 100.0 37 ..................................... GTCAGCACGACGTCTGACATGACGATCACCTTGGAGG 1902092 37 100.0 36 ..................................... ACAAATCGCAGCGGCAATCTCTGACGTGTAGGACGA 1902165 37 100.0 37 ..................................... CAGGTCGCCGGTCAGCTGCTCGTAGGTCACGCCCATG 1902239 37 100.0 38 ..................................... AAGGCGAAGCTGGGCATCCCGTGGGTTGGGCTGTCGAT 1902314 37 100.0 37 ..................................... ATCTTCCTGGGGCAGGGCGCCACCGGCTCCTTTGCCC 1902388 37 100.0 37 ..................................... AACACGCTGCTGGGAGTTTCCACCGGCGGCCCGAGGT 1902462 37 100.0 37 ..................................... ACGACCGCCAGCTGCATGGCCGCCTGGATCACCTCCG 1902536 37 97.3 39 ..A.................................. GCAGCTACCTCAGCGAGGCCCTGCGGATGGCCTGGAATG 1902612 37 100.0 38 ..................................... GCTATGTCGCCAAAGCAAGCGGTGGCAGGCTGTACGTC 1902687 37 100.0 36 ..................................... TCGTGCGGGAAAGACGGGTCGGTGGCAGCAACGAAA 1902760 37 100.0 38 ..................................... AGCTCCGCCAGGAAAATGGCGATGGCGGTCCAGTCCGG 1902835 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 73 37 99.9 37 GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC # Left flank : CGTGACCTACGACATCGGCGATCAGAAGCGCTGGCGCCGTGTGTTCAAGGTGATGGAGGCCTATGGGCGCTGGCTGCAATTCTCGGTCTTCCAGTGCCGCCTGACCCCACGCCGCCGCGCCGCGCTGGGCGCCCGGCTGGACGGCATCATCAAGCCCAGCGAGGACCATGTGCTGATCATCGACATCGGCCCGGCCGACGCGGTAGACCCCCGCGTGGAAAGCCTGGGCCGTCCGTTCGAGAGCATCAAGCGCGAGGCGGTGGTGGTGTGACCCGCGCGGCGCGTGTAGACTACCGCACTGCCGGGTGCCGCGCGAGCGGTCCGGCGCATGCGGAATCCCGGGACCCGCTCGCATGTAGTTGGGCCATTGATTCTGCGGGAATTTTGGACAACGTGAAGAACGAAACGTAACCGCGATCGGCGGCTCGCGACGAACTTTTCGCGGACCGCTCGAATCCGAGCCGATTTTCAGCTATAGAACAGGAGAGTACAGCCCACCT # Right flank : CAAGTGGCAGCAGCCGAAGGCTGGCCACAAGATCGTGCCCCTGAGCGTGGTTTAGGAGCTGCTGTGGGGAACCGGCCCGCCGTAGCGCCCTCCTATGGCTGGCGTAGGCGGGCCGGTTATCCACAGCGGGGCGGTCATCGCGGTTCTTCGATAGAGTCTGGTCACCACACCTCAACCCACACGAAGGGTGACCACGATGACCGACGAGATGATGGCGCTTCGCGCGATGCTTGAGAAGGGCGCGGATGCCGATGTTCTGCGTGAGATGATCGGCTTTGCCGCCGAGCGTCTGATGGAACTGGAAGTGCAGGGCCTGACCGGCGCCGTCCACGGCGAACGCTCGGCCGAGCGGCTCGTTCAGCGCAATGGCTACCGGGATCGCGACTGGTAGACCCGAGCCGGGACCGTCGAGCTGCGCATTCCCAAACTGCGCAAGGGCTCTTACTTCCCCGGCTTTCTGGAGCCACGGCGGATGGCCGAGAAGGCGCTGACGGCGGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.80,-17.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //