Array 1 30169-26540 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQL01000016.1 Salmonella enterica subsp. enterica strain 288_13 NODE_16_length_100493_cov_15.8296_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30168 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 30107 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 30046 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 29985 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 29924 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 29863 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 29802 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 29741 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 29680 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 29619 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 29558 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 29497 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 29436 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 29375 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 29314 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 29253 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 29192 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 29131 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 29070 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 29009 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 28948 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 28887 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 28826 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 28765 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 28704 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 28643 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 28582 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 28521 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 28460 29 100.0 31 ............................. CGCGCTGGTGCAGACGCCGCGCCAGCCGTCA 28400 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 28339 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 28278 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 28217 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 28156 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 28095 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 28034 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 27973 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 27912 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 27851 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 27790 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 27729 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 27668 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 27607 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 27546 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 27485 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 27424 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 27363 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 27302 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 27241 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 27180 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 27119 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 27058 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 26997 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 26936 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 26875 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 26814 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 26753 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 26692 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 26631 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 26569 29 96.6 0 ............T................ | A [26542] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47898-46713 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQQL01000016.1 Salmonella enterica subsp. enterica strain 288_13 NODE_16_length_100493_cov_15.8296_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 47897 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 47836 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 47775 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 47714 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 47653 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 47592 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 47531 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 47470 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 47409 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 47348 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 47287 29 100.0 30 ............................. CTATTTACCACGTATTTATCAGTTCGACAA 47228 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 47167 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 47106 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 47045 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 46984 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 46923 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 46862 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 46801 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 46740 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //