Array 1 8892-9283 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000002.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 8892 35 100.0 36 ................................... TTACCACATAATTTTGTAAGATACATTTCTTTTTCA 8963 35 100.0 36 ................................... TCTTATGGTCAAGAAGCAATAGATACTTTTGTAAGA 9034 35 100.0 38 ................................... TATGCATCGTAAAAATATTTTTTGGCTTTGTTAACTAA 9107 35 100.0 36 ................................... CATACTGTCTATAAATTTTAGAACAGTTTCTTTATC 9178 35 100.0 36 ................................... GTTCCTTGGAACAAGTTGTTAATAGTATCGGAAATA 9249 35 97.1 0 ................................A.. | ========== ====== ====== ====== =================================== ====================================== ================== 6 35 99.5 37 GTTTAAAACTAACCCCGTTTATAGGGGACGGAGAC # Left flank : ATAAACCCTAGTACAAATGTACTAGGGCTGGGTATAGGATAATTATCATTATTATAATATATAACTGAAATTTTTTATTTTATCATATCTTAATTAATATTATTGACAAAAATGGCATTATCTTTTATTTTATCTATATAAATCTATAACATAATATCTTGATTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTCATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGAATATCATATATTTTTTCACTAATATTTATACACGACTTCATTTTTAAAACGCAAAAAATAGCCCAAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTGAAGTGTCTAACATCACTCAATCGATCTAAATCCTGCTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : CTATTATAAAAGAGCAAAAGTATAATACTTTTGCTCTTTTTCTTTTACTATTCTTTATAAAAAATGCTGAGATAAAAGATTTTTCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTTCTTTATTTATTAATCATCAAAAACAGCATCCCAAATTTCATCTACTACATATTCAATTATTGCATCTTCAATATCTTCATCAAACATAAATTATTCCTCCAAATTGTTAATCCATACTATTCACTATTTTTATATTTTACCGCCTTTTTATTTTTATATCTTCTATCATCTGCCTAAATATTTTCTCCTTTTTCAAACATTCTACTTTCATATATCATACCTACTTTCTTATCATTTCTTATTTAAATAACTTATAAAGTCCTCCTAATATTGCCCCACCTATCGCCACTGGTGCTACTGCTAAACCTGTTACTGAACATATCGCTGCTGTTGCCGCCGTCGTTGCTACGCCCTTTGCTCCTGCTGTTGCTACATCTCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 11196-11731 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000002.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 11196 35 97.1 34 ................................A.. TTTTACCCAGAACCCATAAAACATTTTTGGTTTG 11265 35 97.1 39 ................................A.. GCACATTCATCTTTTCTCACTAAATAACTATTGTCATAC 11339 35 100.0 36 ................................... AGATAAAATGCTTTTCAACTGTTGTGTTATTTTGTA 11410 35 100.0 40 ................................... TTTACAAACATAGTGTCGAATTTTTCCATTGCAGCTTCCT 11485 35 100.0 36 ................................... ATCTTTTTCCAAATCTCTTAGAGAATCCTGGATTTT 11556 35 100.0 36 ................................... ATCTTTTTCCAAATCTCTTAGAGAATCCTGGATTTT 11627 35 97.1 35 ................................A.. TAGTAATAAGAATCGCACTCATTTTTCCATGCTAA 11697 35 91.4 0 .................C..............A.T | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 97.8 37 GTTTAAAACTAACCCCGTTTATAGGGGACGGAGAC # Left flank : TTTTTGGCATTTCTACCAAAAGTTTTTTATTTTATTGACAAAAACTTTTACATCTTTTATCTTAGTTCTATAAGTCTTACATTATATATATCTTGCTCAAGACTTTCATTTTGGCATTTATTTATAAAAATTTTCACTATTATAATCAAAATAAAACTCTAACCGAAGATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTCATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATATCATATATTTTTTCACTAATATTTATACACGACTTCATTTTTAAAACGTAAAAAATAGCCCTAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTAAAGTGTATAACATCGCTCAATCAATCTAAATCCTGTTCTTAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : TAAAAAAGTCGCTAATTATGTTTAGCGACTTTTTTTCTTTAATAAATATTCTTGTAGACGTACAAAAATAGCTCTAGTCAAAAGACTAGAGCTATTCTTATATTATTTCTAAAAACTCTTTATCACATAAAAAATCCAACATTGACAAAAATCCCACTATTATATATTACTAAACCGAAAAATTTACCTTCAGGGAAAATTTCCCATTCTACGGAAAAATCCCTGAAGGCTTTATTTATCAGCCTTCAGCTTTATCTTCTTTAAATCCAACTTGTCCATTCATTAACAATGGTAGAAGAAAATCTCTTAATGAAGTAAGTTCTTGATTTTCCTTTTTATTTAAAAGAATTTTTTTATCAATATCATTTAATATTCTATTTATTCGGTTCTTCAAGTTATTTGGAACAGATACTATTTTTACTTTATTTAAGTTCTTTTGATTTATTTTCATTTGAATCGAACCCGTCTTTATGGTAACTACAGGTATATCTTTTAATATC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAGAC # Alternate repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 557832-558379 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 557832 35 100.0 38 ................................... ATGATGTAAAATTACAATCATTGTTCCACATTCCTAAA 557905 35 100.0 36 ................................... GTATCGGCATAAGATATAAAGGCAGATGCGATTAAT 557976 35 100.0 37 ................................... CAAAATTAGTGTTTAATTCAATACCATTGATAATTGT 558048 35 100.0 38 ................................... CCTTTTCTAATACTCCAATATTCAGATCTTTTCATATT 558121 35 97.1 38 ................................G.. CAAAGATAACGTTACTATACTTAGAGAAATCTTTTATA 558194 35 100.0 40 ................................... TTTCATAGGAATATTTTTTCATGAAGTTATATATTTTCTC 558269 35 100.0 41 ................................... CTTCATCAGCCAATTCTTCGGAAGAAGAAAAAGTTTTGTCT 558345 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 99.6 38 GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Left flank : ATAAGCCCTAGCACATTTGTACTAGGGCTGGGTATAGGATAATTATCATTATTATAATATATAACTGAAATTTTTTATTTTAGCATATCTTAATTAATATTATTGACAAAAATGGCATTATCTTTTATTTTATCTATATAAATCTATAACATAATATCTTGATTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTCATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATATCATATATTTTTTCACTAATATTTATACACGACTTCATTTTTAAAACGCAAAAAATAGCCCAAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTGAAGTGTCTAACATCACTCAATCAATCTAAATCCTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : CTATTATAAAAGAGCAAAAGTATAATACTTTTGCTCTTTTTCTTTTACTATTCTTTATAAAAAATGCTGAGATAAAAGATTTTTCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTTCTTTATTTATTAATCATCAAAAACAGCATCCCAAATTTCATCTACTACATATTCAATTATTGCATCTTCAATATCTTCATCAAACATAAATTATTCCTCCAAATTTTTAATCCATACTATCCACTATTTTTATATTTTACCGCCTTTTTATTTTTATATCTTCTATCATCTGCCTAAATATTTTCTCCTTTTTCAAACATTCTACTTTCATATATCATACCTACTTTCTTATCATTTTTTATTTAAATAACTTATAAATTCCTCCTAATATTGCCCCTCCTATCGCCACTGGTGCTACTGCTAAACCTGTTACTGAACATATCGCTGCTGTTGCCGCCGTCGTTGCTACGCCCTTTGCTCCTGCTGTTGCTACATCTCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 560464-560715 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 560464 32 100.0 40 ................................ GACTAGATTCGCTCGTACACTTCAACACGAAGTTAGTTGA 560536 32 100.0 44 ................................ GACTTATCGAAGGTATTTAATTTAGAATATTTTAAATGACTCAA 560612 32 96.9 40 ....................T........... AACACGTATCATCTTTGTATTTGTTTGTATAAACAGCAAC 560684 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 4 32 99.2 42 GTTTAAAACTAACCCCGTTTATAGGGGACGGA # Left flank : ATTTTTATTGACAAAAACTTTTATATCTTTTATCTTAATTCTATAAGTCTTACATTATATATATCTTACTCAAGACTTTCATTTTGGCATTTATTTATCAAAATTTTTTACTATAAATATCTTTTATAAATAAATTCCTATATAATTAATATAAAACTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTTATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATAAAAGATAGTATATATTTTTTCACTAATATTTATATACGACTTCATTTTTAAAACGCAAAAAATAGCCCTAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTAAAGTGTACAACATCACTCAATCAATCTAAATCTTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : AAATAAAAAAGTCGCTAATTATGTTTAGCGACTTTTTTTCTTTAATAAATATTCTTGTAGACGTACAAAAATAGCTCTAGTCAAAAGACTAGAGCTATTCTTATATTATTTATAAAAACTCTTTATCACATAAAAAATCCAACATTGACAAAAATTCCAATATCATATATTGCCAAGCCGAAAAATTTACCTTCAGGGAAAAATTCCCATTCTACGTAAAAAATACCTGAAGGCTTTATTTTAACTATATTTTTGATGGATTTATATTAACACCATTTTTCTTTGCTCTTACTATATCAATCATTTCTTATAAAACACTTTCCAAATCTGTAAGAAGAGAAACAATTTGTAGATTGTCAAATAATCCAGCAAAATGAAGTTCTTCTTTCAATAAGTCTTTTCTTTCAAACTTACCATTCTTATTAATGAAGATAATCAGTTCTTTGATATATGCTAACTGTGCATCAGTTCTACCTTTAGATTTTTGATTATCTAAAAAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 664767-665123 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 664767 30 100.0 35 .............................. TGGATTTTCAAACGACCTTTTTGCGTCCATCTAGT 664832 30 100.0 36 .............................. AGTAGTTGATTTTTCAATCTCATGCACAAAATTCCC 664898 30 100.0 36 .............................. TTCTTTCCTTTATTAAATGCCTTATCTATGTCTTGC 664964 30 90.0 36 ...............AA......T...... CAAATATCATTTCCATTTGTGGATTGATAAGCAATA 665030 30 90.0 34 ...............A.TT........... TGATAGCGTAACTGCTTCAATGGTGTCTTACCTA 665094 30 76.7 0 ...............A.AT....TA..G.A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 92.8 36 GATAAATATCAACAGGTGCTGTACGAATAC # Left flank : CAACTCTAATTAAGGCTTTAAAAGATATGTAAAAATTATATAAGCGTTCATCAGAGTGAGTCTATTTTATAGATATTACAAAAGCTAGTAATTTTATAAAATGGTCATGAGGAATATTATAAAAATAGGTGATTTTGTAATAACTAAGAATATCGCCAAAGATGATGACTATTTCTGTAAAATAAAAAAAGCTGGTGCAGTCATTTAAAACTACATCAGCTTTTAAGATAATGAGATTATTTATAGTATATATCGTATCATTTTAACTTTGGTATCAATCAATGAAAAATTTAAATTAATGGTGGATCAATATTACTATGTTAATTGATGATGCACATATTTTACCAGCTAAATTTTTATAAAATCTTAATAACTACTGTGATTACTAGCTTTATAGATTTATAACCAATATTTGCTATTTGCTGGTAAATCTTTTTAAAGTCTTGCAATATTAATAGTTTATAACTATAATGTAATTAATAAATTCTAATAACATTAGG # Right flank : AAATTGAATATGTATTATTTGGAGTATGGCGGTTATTAATAAAAATACCGCCATATTTTGATATATAACTATTAGTCAAAACTAATTGATATCTTGTTATATTCATATATGGCGGTTAAAATTAACGTACTGAAAACGTACTATTATAAAAAGAACAGAAAAAAATATAAATATTTAAATATAAAATAGCCTATATTATATAGGAAGGAAAAAGATAAAAATAAGGTAAAATTTGATTAAAAATATATGCTGAATAATTAAGAAATAAAGTCGTAGCCTTTTATTAAAAGGTTACGGCTTTTTTGTTTTACAATGATAAAATTTATTAGATTTTCTATTTTACATTATTGGCGAAGTTTAAATAAAATAAATATTAGTTTATCCTTGTTATAATAATTTATTAAGCTATAAAGATAGAATAATCAGCATAAAAAGTTATTTTATTAGTAAAAAATATGTAAATATGTAAACTTTTTTCTTGACTATGTAATAGATAAGTT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGGTGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 696576-695556 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 696575 30 100.0 35 .............................. CCCTTGAAATTTTGGGCAGTAAATTTTTTGGCACG 696510 30 100.0 38 .............................. TTTGACTACACGAACCCACAAATCTGGGGCAATAACCT 696442 30 100.0 35 .............................. TGTTCTTTTTTAGCGTATATCTGCATTGCTTTTAA 696377 30 100.0 36 .............................. TTTGCCATTGGATAAGTTGGTCTATTTTCCAATAAC 696311 30 100.0 36 .............................. GTAGTGCTACTGAACTTTTTTCAGTAGTCTGCTGAA 696245 30 100.0 35 .............................. TTAGAAAAATTTGCAACAGGTGGCAAATCTGTTAA 696180 30 100.0 37 .............................. TATAAAAAAGCATTTTGTGATAATTGTACATTTCCGT 696113 30 100.0 35 .............................. AGATAACCTAAACGCTACATAAAGGAAAGTGATAA 696048 30 100.0 36 .............................. TCTGGCTTTAAATAGTTGAACGAATAAACATGTTTT 695982 30 100.0 36 .............................. AAGTGTAAAGCGTTTATAAACGAGATTGAGGGATAT 695916 30 100.0 36 .............................. GAAAAACAAAATAGATGAGTATGACGCTTCACTAAA 695850 30 100.0 37 .............................. CAGATGCTCTAATGCCCTTTTCCAACCTTCTATATCA 695783 30 100.0 35 .............................. CTTTTAGGGATTGACACGCTATACAACAAATAATT 695718 30 100.0 36 .............................. ATTGTTTCTGTAGGATAACCAACAATATTATAAAAT 695652 30 96.7 37 ...........................A.. AACGTCAATTATTTTCGCTACATCGTATTTATAAAAA 695585 30 86.7 0 .......................TT..A.A | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.0 36 GATAAATATCAACAGATGCTGTACGAATAC # Left flank : TTAAATTTTTGCCTGCTTTTACTTCATCAAGAACTTGCTTTGTTTCATTATTAGGATTTAATGTTAAAGCAAAAGGAATGCCATTATTTCTAACAACAGCATTTAAAAACATATTTACAGCTGTAGAAGTATTTAATCCCAATAAAGATAAAATTGCTTCAGATTGTTTTTTTAAATCTTTATTAACTCTTATATTTAACGTTGTAGTTTCAGACATATATATCACACCTCTCAATATTATTATATATAAATTTGACAAAAAAATATATAATAAAGACAAAAATTGACAAAATTCATAGATTTTTAATCATATATTTATAAATATTCTTTAAAATAAAATTTACCAACCTAAAATTTATAAAATCCTCATAAAGCTTGATTTTATTGACCTACTCAAATCTAATATATTATCTATCATTTGCTGGTAAAAATTATAAAAATCTTGCAATATCAATAGTTTATAACTATAATGTAATTAATAAATCCTTAATAATATTAGG # Right flank : AAGTCCTCTTTATTAGATAAGAGGACTTTTTTATTCAAATTTAATTAATTTTTCTTTTCAATACTCACCTTTATAGGTTATAATTATATACATTATGCTTAGAAAGGTTTTTATCATTATGAAAAATTTCTTTATTGAGTTTAAAAAATTTGCTTTTAAAGGTAATATGCTTGATTTAGCAGTTGGTATGATTATTGGTACTGCTTTTACAGGGCTTGTAAATTCCATTGTAAAAAATTTAATCATGCCTATAATCAGTATTTTTACTGGCGGTATTGATTTTAATAATATGTATCTGCCACTTAGTAAGGCGACTTTTATACTCGCTGAAAAAGGTGCTGACCTTGAAACAGCAAAAAAAGCTGGTGCAGTTTTTGCTTATGGGGCTTTTTTAACAGATTTTCTCCAATTTTTAATTTTGGCTTTCGTAGTCTTTTGTTTAATTAGACAGCTAAACAAATTAATTCCTATTCCTAAAGAACCGCCAAAAACAAAAATCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATGCTGTACGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 741883-744083 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 741883 30 100.0 37 .............................. TAGCTCGCTGTGGTATTGGTGAATTCATTTTAATTGA 741950 30 100.0 35 .............................. TAAAGTGCCATCATATCATTATGAAAGATGATACC 742015 30 100.0 36 .............................. ACTGGTTCCTTTTGTTATTAAAAGTTTTCTTGACTT 742081 30 100.0 36 .............................. CCACGTCCCACTGTCCTTGAACCATTAATCATATCA 742147 30 100.0 35 .............................. AATAGAATATTATAAGAATAATCCAGATGCACCTA 742212 30 100.0 36 .............................. GCGTCTGCCACGACTTCTGCTGTAGTTCTTAAATAA 742278 30 100.0 36 .............................. CCAAGTTTTGGTAATTCTTGTTTAAGTTTGTCCTCT 742344 30 100.0 36 .............................. TTATAATCATCTTCTTGCAGTTGGTACAGTTCTTCT 742410 30 100.0 37 .............................. ACGCTATTAACCTGTAGTACTCTATCATCATATAGGA 742477 30 100.0 36 .............................. TAGCCTTCTGGCAATCATCAAACCAGAGGCATACAT 742543 30 100.0 34 .............................. CAGTAGCAAGTTCATCTGCCGACATTTCTTTTAC 742607 30 100.0 36 .............................. AGATACAGTGGATTTTGTATTTAATCGTGATGTTAT 742673 30 100.0 38 .............................. ACTTGTAACAATATTCTTTTCTTATCTTTAGCCATAAT 742741 30 100.0 37 .............................. TTAACGTCCCCATAGCACGAGATTGAGCCATTAAAAA 742808 30 100.0 34 .............................. CCATATAAATAATATTTGTTGCTATCAATGTTGA 742872 30 100.0 36 .............................. TTTTGTTCTATGCTCTTTTTTATGGCATCTATTGCA 742938 30 100.0 34 .............................. ATTTATCTGGTATGGATAAAGATGAGCTACTAAA 743002 30 100.0 36 .............................. CCTTTATATAAGACAAAAAACGTGTAAATATTATAA 743068 30 100.0 36 .............................. TATTGATGAATTAAAAAAACAATTAGAACAAGCACC 743134 30 100.0 36 .............................. AAGTAGTCTTCATCAACCTTAATTATATGTTCTAGA 743200 30 100.0 38 .............................. TATGTATAATAATAAAAGACAGAATATTATGTAAATTA 743268 30 100.0 36 .............................. TTTGCAAAGTTTTCTTCATTTCTGCAAGTAGATATA 743334 30 100.0 34 .............................. TTTAGCTCTCACTTGAGCAACATAATATAGCTCT 743398 30 100.0 37 .............................. TTTAGCATATAAAAATTTTAAAGTCAAGACTGTAAAA 743465 30 100.0 36 .............................. TTATATCACCTCATATATATTATATCATATTTGATA 743531 30 100.0 35 .............................. TCGTTTTCTAAACCTTCCCACGCTTTTGCTATTTC 743596 30 100.0 36 .............................. CTAATAAATGCAATGAGGTGATTATGTGTTTACAGT 743662 30 100.0 35 .............................. AAATTGGCTAATAAAAAGCCGAAAGTAGAATTTAA 743727 30 100.0 34 .............................. CTAATTTATGCAATTATGTTCCATCTTTTAAGAA 743791 30 100.0 36 .............................. AGCTAAAGTAGCAGCATTAAAAAAACAATTAGAAGA 743857 30 100.0 36 .............................. TTAGACAGTGGGGATATAATAATTGCGGAGAATTTT 743923 30 100.0 36 .............................. TATATTTTTATTTTTCCTTTTGTAGCCATAATAAAA 743989 30 100.0 35 .............................. ATAGCTTTTTTTCTAGTATCTTTATCTTTAATACT 744054 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 36 GATTAACAGTAACAAAGGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCAGGGTATTGATGAATGAGTAAAAAAATAAATTATAATTATGCTTTTTTATTTTATGATGTAAATGAAAAGAGAGTACAGAAAGTATTTAAGATATGTAAAAAATATTTATCGCATTTTCAAAACTCAGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAGTTAGAGTTACAAAAAATTATAGTAGATGAAGAAGATTTTGTTTGTATTATAAAATTAATGAATGATAATGTATTTGGTGAAGATATTTTAGGTAAAAAAGATATAGAAAATGGAGAAAGTTTGATTTTATAAACTAAATTTTACCAGGCATAAAAATGAGTATATGTTTATAAACCCTTATAAATAAAAGAGATATAGTGAATTTCTTGCATTATAAAGATAAATACATTATGCCTGGTAATTTTTACTTAGAATGTTGAAATATCAAGGCTTTTGAACTATATTATAAAATGTAAAGTCTTTAAAAACGAGG # Right flank : TCCAAGAATCCTCTGTCTTTAGATATGGGGAGTATGTCAATATTTGTATTATGGTGATGTCTATGATGACTGTCAGTGCAAATGCGTTTGATGATTTGAAAGATGACTTAAAAGATGATCAAGCATTGAAATTAGCAACGGGATATCTAGTTGCTAATGAGGTGCAACGATTAACGAAAATAAGTGCATTAGAATTATTCTTAGCTTCAACAGCAGTTAATTATATGGACAATAAAGATCTAACAAATGCAGTAGTAAAATCTTTAGTATATCAGATAAAATTTTAAATGATGGCATAAACATAAGGATGTTGTTTTGTATAGAATGATATTCTTATGTTTTTTTATTAGATGAAACCTTAGTAATATGTCTTTATAGTATAATTGAAAAAAACTATAGGATATGATGATATGAAGGATAATTTTAAATTGGAGATGACAACAGTATGGTCTTTTCCTAAAAGAGGCAATTGGGCTACACATTCAGGAATGTATCGTGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAAGGTTGTTTTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 6 787311-789712 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 787311 30 100.0 36 .............................. ATGTTGTCTTTATGATACTACTGCTGGGAAATATGA 787377 30 100.0 36 .............................. GCAATACTAGATGGCAATATATCTGAAATCATATAA 787443 30 100.0 35 .............................. AATTTTTTGCACCCCCTTGAAATTTTGGGCAGTAA 787508 30 100.0 36 .............................. ACTATTAGATATATAGCACCCAATACTAATCCTATT 787574 30 100.0 34 .............................. TAAAGTTCAGTAAGTCTAGTTTCTAATCTATCTA 787638 30 100.0 36 .............................. AAAGCTTGCAATGTTTCCGCACTATCGAAAGTAAAA 787704 30 100.0 36 .............................. ATATATTGGAAACACTGTAGTTAAAACAATGTGGCA 787770 30 100.0 36 .............................. TTTACATACTGAATATTGATTATCTCCTAGTAATTT 787836 30 100.0 36 .............................. GTTAAACGCTAATCTATTTTTGTCATTATCCATATC 787902 30 100.0 34 .............................. GGTATTTTACTTTTAAACTCAATCTCTTTTTTAG 787966 30 100.0 34 .............................. GGTATTTTACTTTTAAACTCAATCTCTTTTTTAG 788030 30 100.0 36 .............................. ATAGATACTTGAAAATATTCCGATACCTTTATAAGT 788096 30 100.0 36 .............................. CCGCGTAATTTAGGCTTAATCCAGTGTAATTATTAA 788162 30 100.0 36 .............................. TTATTATTGTCTTGTACAATATCATCTTCATATACA 788228 30 100.0 36 .............................. TTTTTATTGTTACTTTCTTCGTATTCACAGCTTGCA 788294 30 100.0 36 .............................. AATTAAAGGCAAACGGCGATTTATTATAAATTTTGC 788360 30 100.0 35 .............................. TTTAGCAGTGATGGTATTGAAGTTAGATGTGTATA 788425 30 100.0 34 .............................. TTACCACAATCACAGTGGCAAAGAACCTTATTGC 788489 30 100.0 34 .............................. ATTTTCTGAATTTTCTGCACTATAGTTTATACAA 788553 30 100.0 36 .............................. AGGATTATAACTATACAAGAATATAATGAGTGTTTT 788619 30 100.0 36 .............................. TAGTGGCAATGTTGTTTACATACACCTGAAAATTTT 788685 30 100.0 36 .............................. CTGAGCAACCTACTTTCAAGGGGTTATTTTAGCCAA 788751 30 100.0 36 .............................. TGTTTATTCGCCTGTCTTAACTGCATTTCCTAATAA 788817 30 100.0 37 .............................. TCTTTACCAAATAAAATAGCTTATAACATAGGATATA 788884 30 100.0 37 .............................. ATGTCCTAATTGTAAAGAATGGCACCTTATAACACAC 788951 30 100.0 37 .............................. TTTATTGGCAGCATACCAGTAAAATCCCCACTGTCTA 789018 30 100.0 36 .............................. ACCATGAACAAGCCTACTCTACGTGACATACCAATC 789084 30 100.0 36 .............................. GTTGATAAAATTGGTGATGCTATAAAAGAGTTAAGT 789150 30 100.0 36 .............................. GGAAATGAAGCTAGTGAAAGATTGATTGAACATGGA 789216 30 100.0 36 .............................. ATTCCCTTAATTATTATGTTATTTTCTGTTGGCAAT 789282 30 100.0 36 .............................. TAGTGGCTGGATTTATGAAAAAGACGCTATGGATCC 789348 30 100.0 36 .............................. TCGTCACCTAAATTAGTAAATTTAGTAGATAATCCC 789414 30 100.0 36 .............................. TTGTCTTAATATGGCGTCTAGTTTCATCGGTGAATT 789480 30 100.0 37 .............................. TCATTTGCTTTATAGCCTTTTACATCTTCTTTTAGAA 789547 30 100.0 37 .............................. GCAATTCCACATAAGGCTTTTAAACCTCTAGACCACA 789614 30 93.3 37 ...............T............G. TATACAAACGTTATGTGGTAATGTAATTTTGCAAAAA 789681 30 80.0 0 ............T....TAC........CA | T,A [789702,789707] ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.3 36 GATTAATAGAAACAAGAGTTGTATTTGAAT # Left flank : GCAATAGATATCAATACAAGAAAACCATTACTTGGCAATATCACAGGTGGTCTTTCTGGCCCTGCTGTAAAACCTGTAGCACTTCGTATGGTATGGCAAGTAGCAAAAGCTGTAAACATTCCAATCATTGGTATGGGCGGTATTGCAAGTGCAGAAGATGCTATTGAATTCTTGCTTGCAGGTGCAACAGCAGTCGCAGTAGGAGCACATAACTTCATTGATCCATCAGCATTAAAAGTAATTGCAGATGGTATCGCTGAATATATGCAAAAACATAATATTGAAGATGTAAATGAACTTGTAGGAGCATTACAAGCTTAAATAAAAAATTACCAAGTGAATTTTTAATAAATAGCCTATAAAGCTAAGCAATATAAGCTTTATAGGCTATTTTTTATATAACTAATAAAAATCAAAATCGCCTGGTAAAATTTTTTTATATCCTTGAATAACAAGATTTTAGAAGCTATAATAAAAAAAGAAATGCTAATAAATATAGG # Right flank : AAGAACAAAGAAGAATTTTATTTTATGGAAAAATTATATTATATTGGGATAAGGAAGGTGAAAAATTGACCAAGAATAAATAAAAGGAGTTTTGTAAATGAAAAAAATTCTTATTATATTTTTTTTATTATTTGTTTTTTGTGTTCCAGTATCGGCTAATACTGTAACTATTTCTGATGATTTATTCAATGCTACACTAAATACATCTAGTCCTATAAAAAGTATATTTCAAAATAGAGCATTTCCGTTATCTATAACAACAGAAGACAATACGATTTATACTTTTAGAGCCAAACCAATTACAGATAAAATATTATCTATACATCATATTCCACTGGATATAAATAATGATAATTTTCTTGATGAATGGAAAAACAATATATTAAATAATATTAATGGTATATACTATATAGAAACTATACCTATAAAAAAGGGAATTATTTACATTACTAGAGATAGTAAAAAATCATATATATATACTATCTATATAAAAAATAATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGAAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 950360-952028 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 950360 30 100.0 36 .............................. AATAGAAGATAAAGTCTTAGAAACTCAACTGCTTTG 950426 30 100.0 36 .............................. TTAACGCCAGTAGAATACAACACTGCATTACTTCTT 950492 30 100.0 36 .............................. AGATACTGTAAGTAAGTTTGTTATAGGCATGAACAA 950558 30 100.0 37 .............................. TAAAAAAGGGGGCTTTAAAAATGTTGTGTGAGTATCC 950625 30 100.0 37 .............................. TAGAAAACATTAGCAATATTGAAGAATGCTTTAAACA 950692 30 100.0 36 .............................. AGTTTTTATGTTAATTTTTGACATGTTAATGACTGA 950758 30 100.0 36 .............................. TTAGAAAATTAATGGCATCATATATACCGCCATCAA 950824 30 100.0 36 .............................. TACGAAAGTTAAATACTTTCATTCCATCTTATTTAA 950890 30 100.0 34 .............................. ATAGCAATTCTTTGAAAGTTATTTATATTATCCG 950954 30 100.0 36 .............................. GAGAGTTTATGTACTAACTAATTACTGGAGTAGTTT 951020 30 100.0 34 .............................. TTGTTAAAAAGTCAAATAAAATACTTCTGGATTA 951084 30 100.0 35 .............................. GCTAAACATAATAGAGCCATGACTGATAAAGAAAT 951149 30 100.0 36 .............................. AGAGAGCAATGCCTATGTAAATTACATGATGACTGA 951215 30 100.0 35 .............................. ACTGTTCATTTTAAAACTGAAAAAGAAATTATGTG 951280 30 100.0 36 .............................. GTATGATAGAGATATTTTGAAATACGCACTATTAAA 951346 30 100.0 34 .............................. ATAATGATGATGTTATTGCTAAAGCAAAACAAGA 951410 30 100.0 34 .............................. TTTAAACTTTTCACGGTTCTCCTGTCTTTTCTTT 951474 30 100.0 35 .............................. GCAGATGAACTTGCTACTGTAGAAATTATTTCTGC 951539 30 100.0 36 .............................. TAAAACAGCTACTGCAACTTTAACAGATGCTGTTCC 951605 30 100.0 34 .............................. AGAAGGGGGCTATATTAGCACCCCTTCTTTTTTT 951669 30 100.0 34 .............................. CCAATAAGGGTTTTATTATATATATTTATATTTT 951733 30 100.0 36 .............................. CGGTCCACCATATTAAGAGAATTAACAATTTGTGCC 951799 30 100.0 36 .............................. AGTATTTATATCTATATCTCCTGAACTTTTATTCAA 951865 30 100.0 36 .............................. TCAACAGTGGGGAGCTGGGTTAAAACGTACAGCAAA 951931 30 100.0 38 .............................. TATAGTGGAGAACCATATCATTTTAAAGTCAACTTGAT 951999 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 ATTCAAATACAACACTTGTTAAAGTTAAAT # Left flank : GAACTTGCTAATTTTGATCAGTTAATATTTATCTGTGGTCATTATGAAGGCTTTGATAATCGTGTGGTACAAAATTTAGCTGATGAAGTAATTTCTATTGGCGATTATGTATTAACAGGTGGAGAACTTCCTGCTATGGTGGTAATCGATGCTGTATCAAGAATGCTTCCAGGCGTATTAGGCTCTGGAGAGTCTGCGCCAACAGATTCTTTTTATAATGGGCTTCTAGAATATCCACAATATACAAAACCACGTGAGTATAGAGGTCTTAGCGTACCTGATGTACTACTTTCAGGAGACCATGCTAAAATAGCAAAATGGCGTCGACAAGAATCTTTGCGTGTTACGTATACAAATAGACCAGACTTACTTGAAAAAGTAGAATTAAGCAAAGATGATAAGAAATTTTTAGAGGAATTGAAAAATAATTCTAAATAAAAAAAGGCTTTTAATAGAAGACAAAATCTATTAAAAGCCTTTTATAATTTTTTAATAATAAG # Right flank : TGCTAGAAAAATCAATCTTTATGATTTTCATTATACTATTAAAAGTATTGATATACAAGGATTTTAGTTGTTTTTTACCAGCGATAATAGGATTTTTGGAGATTTTATAAAAAGGTTTAATTTTCAAGCTTTAGAGGAGTTTTTCTTAATTTTAGCTGGTAATTTTATGGTAAATAAAATTTTATCAAGTAGTAAAAAACAAAAAGCAACTATCATTGATAGTTGCTTTAATTTTATAAATCATATGGTGACCCACCCGGGACTCGAACCCGGAACCTGCTGATTAAGAGTCAGATGCTCTACCAATTGAGCTAGTGAGTCATTAATAACAAAAATTATTATACTGCTCATTTATGTATTTTGCAATACTTTTTTATAATTTTTTTCATATGACTAAAATGTTATAAAATTTAATAAATAAATAATTTTCAATAGTAAAACTTAAAAATATGTAATCTTTTTTCGTATTGTCTTAGAATTTATGAATAATTATGATATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAATACAACACTTGTTAAAGTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 8 1022406-1021579 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1022405 30 100.0 38 .............................. GGTCGGAACTACATCAACAGAATAAAATTTCATATTAT 1022337 30 100.0 36 .............................. GCTAAGCCACAAATGGCTCTTGCTAGTGGTGGTATT 1022271 30 100.0 36 .............................. TATATTGGTTGGCAAAACTCTCTAGCAAACCAAGTT 1022205 30 100.0 35 .............................. TCAGAACCGTTACTTACAGTAGCACCACTAGAAGC 1022140 30 100.0 36 .............................. CTTTATCTTAACAAAAGATGTTACAGTGGGGGAGTA 1022074 30 100.0 36 .............................. CCGTTAAAATATTTTAGCCTTGTATAATTGTCGGCT 1022008 30 100.0 36 .............................. TTAAAAGTTTTATATTGAGTAATAAAAAGTTGACAA 1021942 30 100.0 34 .............................. CCATAATTATTACCCTTACCGCCATAAGCATTTA 1021878 30 100.0 35 .............................. TAATGTCTAATTGCTTTTGCATATCGTAGCCTGAT 1021813 30 100.0 36 .............................. TTGATATACTATTTGTAGAAATAAAATCAAGGCTGG 1021747 30 100.0 41 .............................. AAATCATTGTAGCCGAATAGTTGATAGGCTTTATTGATAAA 1021676 30 93.3 36 T.....G....................... TAAATATATCGCCATATGTCGGAAAAATTCCAATCA C,C [1021670,1021673] 1021608 30 83.3 0 ............T..T.......TA....A | ========== ====== ====== ====== ============================== ========================================= ================== 13 30 98.2 36 GATAAATATCAACAGATACTGTACGAAAAC # Left flank : GCTGTCAGACCTTTAAATTCTCTAGTATTTATATTTGGACAAACTTCATAGAAAAATTCTGCCATATCCTCATCAATAGTTCTGATGGTCAAAGTATATATCTTGCCTTTTTTATAGATTTTATCTTTTTCCAATGGCGATAATAAATCATAGCAATAATTTTTATATGTATTTGTATTATGTAATTTTCCTAAATTTTCTTTTGCAAATAAACTTTTATCAATAAATCTAGTCAACATGATTTGCACATCTTGTGCCATGATATCCTTTAATAAATATAATTTTATGCGTATTTGATAAACCTTCATCAAAATGCCCCTTTCTTTGAATTTACCAAGTGATATATTCATCTTTATTTAAAAATGCTGATATATCAATAATTATAACAAAAATTCGTCATTAAATTCTCAAAATCCTTTTCGCTGGTAAAAAATCCCTAAACCTTGATAAAATCACTATTTTCATATATAATATATTTTATAAACCTTAATCTTTGAGGG # Right flank : AGATTTGTTATAGTTATTTTTCTATAACAAGCCTTTTTATTTTGCTTTAATTTAATTTTATCTGTATTGCTCCCATGCCTAGATAAGTATTTACTCCTATTGATGTATACTGGGAAAATTCTGCCAGCATTAAGATTATTTTATTTGCCATTATATTATTTTTTAAACTAAACCTACATTTTCCTTGAAATGTAGGTCTTTTTTTGCCATTTATCATCTGTGGTCTTAAAACGACTTCATAATCATCTAGCTGTATTTCTTGTGCTAGATTTTCAATTAAATCTTGTTCATACAATTTTTCATCAATGGCAAATAAATTCCAGATAGCGACTAAATTCATTATTATATCATGCAGTTGACAAATCATTTTATCTTCTTCGCCAAACAATAAAGTCGGTGTCAAAAAATTAAATTCAATATAGCTACTTTTCAATCTACGTGTAAAATATTTCGTTACTAATTGCTTATATGTAGCACTATGAATATAACTTTTCTTCTCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATATCAACAGATACTGTACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 9 1491506-1492457 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1491506 30 100.0 36 .............................. TTTAGAACCTTGTGAGTTTACTCTCTCAATGTCAGA 1491572 30 100.0 37 .............................. TTTATACACCTCGTTATATTATAACATATGTTTCATT 1491639 30 100.0 36 .............................. GATTTAGCAGAACCTACATATGTAGTGGCTAATGCT 1491705 30 100.0 36 .............................. TTGTTCCAGATTTTCCTGTATAAATAATGCTCTCAC 1491771 30 100.0 35 .............................. TTTTAAAGCACGCCATATTTCATCTTTCTGATCGT 1491836 30 100.0 35 .............................. AGGTTCAGTTATTTATGACGCTATAGCACCTTGTA 1491901 30 100.0 35 .............................. AGGTTCAGTTATTTATGACGCTATAGCACCTTGTA 1491966 30 100.0 38 .............................. TTGCTATCTTCTTCTAATTGTAATTTTCTTGGTGCGCC 1492034 30 100.0 37 .............................. TGTATACAATAACGGTATGGAACTGCAAGACCGACAC 1492101 30 100.0 37 .............................. TGTATACAATAACGGTATGGAACTGCAAGACCGACAC 1492168 30 100.0 36 .............................. GACTACAGCAATGTGTTTGGTAATAACGCTTCGCTT 1492234 30 100.0 35 .............................. TTTGTAAGTGTTAGCAGTAAATTATGGTATTCTAA 1492299 30 100.0 35 .............................. AACAACCTTGAATCAGTAATCAAATTTATATCTTT 1492364 30 100.0 35 .............................. GCGATTACTGATGAAAAGATATATACTTCTGTATT 1492429 29 76.7 0 ...............TT.-.A.....CT.A | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.4 36 ATTTAACTTTAACAAGAGTTGTATTTGAAT # Left flank : AAATACTCATCATAATTCTTTAGATTTATTCTTCATATCACCAAAATATCATGGAGACGGCTTGGGTCTTGCAACATGGAAAACCATTGAGAAAAAATATCCCGATACAATCACATGGAGAACAATTACGCCATATTTTGAACAAAGAAATATACATTTTTATATAAATAAATGCGGATTTCATATAATAGAATTTTTCAATAAATATCACAAAGAAAAAAATATGCCCAATCATATAAATGATAAACCCAATCCATGTATAGATAATTATTTTCTCTTTGAAAAAAAGATGAAATAATCCAAAGAAATGCTACTTGCCAAAGATATTTTATCTCTAATTTTACCAGTTAAATTCTTAAAAAAGCTTTTCATTACCTGAAAAATAAGGCTTTTTATAAAATCTTTAAAATTACCATTATCGCTGGTAAAAAATATCAATATCCTTGTATATCAATACTTTTAATAGTATAATGAAAATCACAAATACTGATTTTTCTAGC # Right flank : AAATAACTTTTCCACTATTTGATAAATATGTAGATAATTATAAAAATAAAAACTCATGGATTAAAATACCCATGAGTTTTTATTTTGCTTTACTCTTTATTAGCTATACCTAATTTACCAAAAACATAAAACGATAAGCTGAGAATCATGCCACAGACAACAGCAAGGCCCATACCTTTTAATTGTACAGGACCGATATTTACAGCAGCTCCACTAAGACCACTTATCATAGTTACGGCAGTAAGTATCATATTTTTCGTACTAGTATAATCGACTTTTTTCTCTATAAGCATACGTATACCAGAACAAGCGATAACACCAAATAACAATACAGAAATACCGCCCATTACTGGTACTGGAATAGCATGAATAATCGCAGCAATTTTACCAATAAAAGAGAAAAGAATAGCAAAAACAGCAGCTCCACCGATTACCCACACACTATAAACACGAGTAATAGCCATAACGCCCATATTTTCGCCATAAGTAGTATTAGGAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 1683810-1685094 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1683810 30 96.7 36 ................A............. TGAAGTTTTTGACAAGATTTGGAAGAAGCGAGGTGG 1683876 30 96.7 36 ................A............. GCAAGAACATTTAGAAGTCATAGAGGTACAACAAAA 1683942 30 96.7 36 ................A............. TTTATAAATGAACGATAACCTTTGCCACCAATAGCA 1684008 30 96.7 36 ................A............. ATGAAAAAGTGAAATTGATAAATAAAATAGGCTCTA 1684074 30 96.7 37 ................A............. AGTTGTAGACTTAGAATTTTTAATACCACGGTTAATA 1684141 30 100.0 35 .............................. GCAAATACAAAAGAAATCACGTATGATTATAGATG 1684206 30 100.0 36 .............................. AAAGGATAAATCGTGGCTGTTATAATATCGCCTTCG 1684272 30 100.0 35 .............................. TAAGTTTTTTCAAAAATATCTGGTTTACATGGGTA 1684337 30 100.0 36 .............................. ATATCTGCACGTTTTTCTAATGTGTCTAGATAACCA 1684403 30 100.0 36 .............................. GCAAGACGCTATAAACGTACTTCAAAATGCTGGTAT 1684469 30 100.0 36 .............................. AGATGATAACAAAGTATTTTATTTAAATTCTTTTGA 1684535 30 100.0 36 .............................. AAACGAAATGAAAGAAACGTTAGAAAAATTAGGCAC 1684601 30 100.0 36 .............................. ACCATTGGCAATGATAAACTAGTATTGTATAATGGT 1684667 30 100.0 36 .............................. ATGGTTATGGATTGGCGGTAATACAAAGCAATATAA 1684733 30 100.0 37 .............................. GTAGTGAGAATTGTTCGATTGCCCCAATAATCTTCTT 1684800 30 100.0 35 .............................. AGCAATGGTAAAATAAAAATAAACGGAACAGATAC 1684865 30 100.0 37 .............................. TTGTGAGTACAATAAAAACCCGTTGTTGTTCTTCCCG 1684932 30 100.0 36 .............................. TGTTCTTGCTTCAACTTATCTCTATACTCTTGTATT 1684998 30 100.0 37 .............................. GCCACCTGTTGCCATTGGTAGCCATTTATATACTTTT 1685065 30 83.3 0 .......................CAAA..A | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 98.3 36 ATTTAACTTTAACAAGTGTTGTATTTGAAT # Left flank : TATCCTCTTGCTAAAAAATATTTAAAAGGTTGCAGTGGTGTTATCACTTTCGTAATCAAAGGTGGTAAAGAAAACGCTGTCAAATTCATGGACTCCTTAAAATTAGCTTCTAATGAAGTTCATGTTGCTGATATTCGTACTTGTGTTCTTCACCCAGCAAGTGAAACACATCGTCAATTGACAGATGAACAACTTGAAGCAGCTGGTATTAATAGTGGTATGGTTCGTTTCTCTGTAGGTCTTGAAGATATCAATGATATTTTAGATGACTTAAAACAAGCTTTTGCTAATGTAAAATAATTATTTAAAGGCATTTGTGTAAACAAGTGCCTTTTTTTATTTTCCCAACCATTTTTTAGTTTAAAACCTAAAAGCCTTATAAATAAAGGATTTATAGAAAATCACCAAAAATCCTTAATCGCTGGTAAAAACTTATATAAATATTGATATTTCAACCTTTATAAACTATAATTATTTATAAAAGTATTAATTTTACTGGC # Right flank : AAGCTGTAACAAAGAGAATTTCTCAATGTTACAGCTTTTTTTATTTTTATGATATAGAAAAGAAAAAGTTTATTAAAATTGGTACTGCTACTGAACATAATACACCATTAATCACAGATATAATAATAAATTCTTCACTACTATATTTTATAAGCATAGGGAGCGTTGTATCTTCACTTGTAGCTCCTGCCGCTGCTATAGCTGCAAATGTATTTAAATATTTTACTAAAACTGGAATCATCATAAAAGCGATAAATTCTCTCATCAAACTACTTAAAAAGGCTATTGTGCCTATCTGTGCATTTGCAAGCGACTCGAGCATTACACCAGATAAACTATACCAACCCATAGATGCACCAATAGATAAACTATATACCAAATTCATATCAAAAATATAACTGCAAATCAATCCGCCAAAAACAGATCCAATAATTACACCTATAGGAATCAATAATATTGTCAAATTATAATTTTTTATCTTCTCGATTATTGATTCATTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACTTTAACAAGTGTTGTATTTGAAT # Alternate repeat : ATTTAACTTTAACAAGAGTTGTATTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 11 2326765-2327242 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2326765 35 100.0 40 ................................... CACCAGATTGTTTTGCATCCTTTTTCTTTAATGTTCTTGG 2326840 35 100.0 39 ................................... TTTTTTCTACACGATGTTGATAATGTTATTTCTCCACCT 2326914 35 100.0 41 ................................... ACAATTGTCCATAAATTGATAGTTTCGAAAATATTTTTCAT 2326990 35 100.0 37 ................................... TAAAAAGATTCTGTCTAGTAATTATATATTCAAATTT 2327062 35 100.0 37 ................................... TTTATATCAATATGCCATTTCTGACACATTGTTTCAA 2327134 35 97.1 39 ....................T.............. CCAAACCCACCAATGCATTGTGTTTTCCAGGAGCAACAT 2327208 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 7 35 99.6 39 GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Left flank : ATTTTTATTGACAAAAACTTTTATATCTTTTATTTTAGTTTTATAAGTCTTACATTATATATATCTTGTTTAAAACTTTCATTTTGGCATTTATTTATCAAAATTTTTCATTATAAATATCTTTTATAAATAAATTCCTATATAATTAATATAAAACTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTTATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGAATATCATATATTTTTTTGCTAATATTTATACACGACTTCATTTTTAAAACGCAAAAAATAGCCCAAAACGACAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGCTTGTGGCACTTTTTAAAGTGTCTAACATCACTCAATCAATCTAAATCCTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGACTCCAGGGCACAGG # Right flank : CCTCTGATTTAAAAATAAATTATTTTCTCTCAAAATAATTTAAGATTAGCCCAATATATAAATAAAGGCTATTATAAGAGGTGATTTATAATGTTTCTAGTAAGATTTGTACTATTCATTATAGCTATTGAAATACTTTTTCCTGACACTGAAGAGTAGTATGGAACGAATTTTTATAAAGCAATAACAATTTGAGTTTTAACTCTTTTTGTTATTGCTTTTTTCATTTTAAATATAAAAAAGCCCGATATCTTAGATATCGAGCCTTTGTTTTATCTCATTTATTTATCTGCTTTTAAAGAAAAATCAAACCAATCTTTTACTTTTACTTCTAAATCATTAAAATTCCCATTATCAACTATATACTTCATTCCTTTATAAATAAAAACTCCAAAACCTAAAACCACAATACTTGTTTCACTGTATTTTATAACATCTCCTATCAATTTATTATCTGATTCATGTATCGCAATTTCTTTCGCTGTTTGTGCATCAAATTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 12 2328697-2329243 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2328697 35 100.0 42 ................................... TTACTTCATCTGGACCTTCTGGTCTCAGCCATGAGTCCACTA 2328774 35 100.0 33 ................................... ATTAGGTCTTTCTCTATATGCCATTTCTGACAC 2328842 35 100.0 37 ................................... TCAAATAAGACTTAGACTACAAATGTTATATAATTTC 2328914 35 100.0 38 ................................... TTTATATGAGTGAAGGACAAATAGATATTGAATATAAA 2328987 35 100.0 34 ................................... TTTTCTACTATTCTCGTTACTATTCCAGATTTCG 2329056 35 100.0 41 ................................... TTACTATTAAGCTAATAGTATATTCCCCATCGTGATTTATA 2329132 35 100.0 42 ................................... ACCATAGATACCGATCATTATTTCTTTTCTTTCTATATTTAA 2329209 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 99.6 38 GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Left flank : ATTTTTATTGACAAAAACTTTTATATCTTTTATTTTAGTTTTATAAGTCTTACATTATATATATCTTGTTTAAAACTTTCATTTTGGCATTTATTTATCAAAATTTTTTACTATAAATATTTTTTATAAATAAATTCCTATATAATTAATATAAAACTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTTATAAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAAGATATTATATATTTTTTTACTAATATTTATACACGACTTCATTTTTAAAACGCCAAAAATAGCCCAAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGCTTCGTGGCACTTTTTAAAGTGTCTAACATCACTCAATCAATCTAAATCCTGTTCTCAACCGCAAAGTACATTTTCAGCCCAATAACGACGCGGGCTCCAGGGCACAGG # Right flank : CTAGCTAAAAAAGACTCTAGTCAAATGACTAGAGTCTTTTTTCTGTTTAATTATTTTATTAGCTATTTATAATTCTTATTCGCTCTTCTCTCCTAATCTACACCATACGGCAAAATGTTCACAATTATTAATTACTACATTATAATCTTCTTCAAATAAACGACTTCTCGCTCTATCAACGATTTCATCTTTAGTATATACTGCATCATACTCTACACGATAAATATCTGAGCCATCAGCAAAATCTTCTAAGCTGTTAATTCTAATAGAGCCTTCATTATATTCGTATATCCATCCATCTCCATCATATATACCATGATGACTATATACACTACGATGAACACCTACATGATCGCCTTTTTTTAATATATGTTTTGCTTCATCTACGCTCATTTTGCGTTTAAAAAATCTTAATATACTAGTTGCCTCATTCACATTTTCTAATGAATCTCCCACATTATTTACAACTTCTACTGCTTTTCCTATTTTTTCCAATCCTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 13 2344309-2344640 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2344309 35 100.0 41 ................................... CTTATCAAAACATAGGTTCGAGACCAGATTTATTTACTCAA 2344385 35 100.0 39 ................................... CAGATACAACCAGACTTAAACCTATTAATTCTTTTTTCA 2344459 35 100.0 36 ................................... TTAATTGTTGATAATAAAATAATATTTCTCTTTCAT 2344530 35 100.0 41 ................................... TCATTTTCAAACAAAGTTTCAACTTTAAAGTCTTTACTTGA 2344606 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 5 35 100.0 40 GTTTAAAACTAACCCCGTTTTTAGGGGACGGAAAC # Left flank : TATTTTTATTGACAAAAACTTTTATATCTTTTATCTTAGTTTTATAAGTCTTACATTATATATATCTTGCTTAAGATTTTCATTTTGGCATTTACTTATAAAAATTTTTACTATAAATATCTTTTATAAATAAATTCCTATATAATTAATATAAAACTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAGTATTGCAAATTTTTGCATTGTAAAATTTATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATACTATATATTTTTTTACTAATATTTATACACGACTTCATTTTTAAAACGTAAAAAATAGCCCAAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTGAAGTGTCTAACATCACTCAATCAATCTAAATCCTACTCTCAACCGCAAAGTACATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : CTATTATAAAAGAGCAAAAGTATAATACTTTTGCTCTTTTTCTTTTACTATTCTTTATAAAAAATGCTGAGATAAAAGATTTTTCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTTCTTTATTTATTAATCATCAAAAACAGCATCCCAAATTTCATCTACTACATATTCAATTATTGCATCTTCAATATCTTCATCAAACATAAATTATTCCTCCAAATTTTTAATCCATACTATCCACTATTTTTATATTTTACCGCCTTTTTATTTTTATATCTTCTATCATCTGCCTAAATATTTTCTCCTTTTTCAAACATTCTACTTTCATATATTATACCTACTTTCTTATCATTTCTTATTTAAATAACTTATAAAGTCCTCCTAATATTGCCCCTCCTATCGCCACTGGTGCTACTGCTAAACCTGTTACTGAACATATCGCTGCTGTTGCCGCCGTCGTTGCTACGCCCTTTGCTCCTGCTGTTGCTACATCTCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGTTTTTAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 14 2346644-2347181 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 2346644 35 97.1 33 .................T................. TGTCGTTTGCCGCTTTACTCATCTTTGCAGATG 2346712 35 100.0 38 ................................... TTTAACATTTCGGATTTAATTATATCACGAATGTATGC 2346785 35 100.0 36 ................................... TATAAATGTGAAATATAAATTGTATTCATGTTTCGA 2346856 35 100.0 34 ................................... TTTTTAATTAATCCTTTAAAACTATCTATTCCAC 2346925 35 100.0 39 ................................... CTGTTAAAGCCTGAACCTGTCTACCTAAGCCATATCTGT 2346999 35 88.6 39 ....G......G.....TA................ ATACCATATTTAACACCTTTTCTAGCATTCCAATATTCA 2347073 35 97.1 39 .................T................. TCATAACTTTCATACCTTTTCTAGCATTCCAGTATTCAA 2347147 35 97.1 0 .................T................. | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 97.5 37 GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Left flank : ATTTTGGCATTTCTACCAAAAGTTTTTTATTTTATTGACAAAAACTTTTACATCTTTTATCTTAGTTCTATAAATCTTACATTATATATATCTTGCTCAAGACTTTCATTTTGGCATTTATTTATAAAAATTTTCACTATTATAATCAAAATAAAACTCTAACCGAAGATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTCATCAAAATAGGTTATAATATCTTTAGTTAATTGAGTTTTAATGAAGAATATCATATATTTTTTCACTAATATTTATACACGACTTCATTTTTAAAACGCAAAAAATAGCCCAAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGGTTTGTGGCACTTTTTAAAGTGTATAACATCGCTCAATCAATCTAAATCTTGTTCTTAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : CTATTATAAAAGAGCAAAAGTATAATACTTTTGCTCTTTTTCTTTTACTATTCTTTATAAAAATCTTTATAAAAAATGCTGAGATAAAAGATTTTTCTTCTACCTCAGCATTTTTATTTTTATCTATTTATTTCTTTATTTATTAATCATCAAAAACAGCATCCCAAATTTCATCTACTACATATTCAATTATTGCATCTTCAATATCTTCATCAAACATAAATTATTCCTCCAAATTGTTAATCCATACTATTCACTATTTTTATATTTTACCGCCTTTTTATTTTTATATCTTCTATCATCTGCCTAAATATTTTCTCCTTTTTCAAACATTCTACTTTCATATATCATACCTACTTTCTTATCATTTCTTATTTAAATAACTTATAAAGTCCTCCTAATATTGCCCCTCCTATCGCCACTGGTGCTACTGCTAAACCTGTTACTGAACATATCGCTGCTGTTGCCGCCGTCGTTGCTACGCCCTTTGCTCCTGCTGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Alternate repeat : GTTTAAAACTAACCCCGTTTATAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 15 2348975-2349384 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPP01000001.1 Megamonas hypermegale strain NCTC10571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2348975 35 97.1 40 ....................A.............. CAAAACCGACATCTAATTTAATATTTTTTTCTAGCAAATC 2349050 35 97.1 37 ....................A.............. TCATACGGATTGTTGACGTAAGAAACCTCTGGCATAG 2349122 35 100.0 41 ................................... GTATTGCCATAGTCTCCTCATCTATTTTAGACTCATGCGGA 2349198 35 100.0 42 ................................... AAACGTGAAGCAAAAATGATGTCATTTGCTGTTTTACTCATG 2349275 35 100.0 40 ................................... TGTTATTAAACCAATCCCAATTAGTTCTTTTTTCATTAAA 2349350 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 6 35 99.0 40 GTTTAAAACTAACCCCGCTTTTAGGGGACGGAAAC # Left flank : ATTTTTATTGACAAAAACTTTTATATCTTTTATCTTAGTTTTATAAGTCTTACATTATATATATCTTGCTTAAGATTTTCGTTTTGGCATTTATTTATCAAAATTTTTTACTATAAATATCTTTTATAAATAAATTCCTATATAATTAATATAAAACTTCAACTGAAAATTCTGATAATCTCAGTCGCAAAACTCTTATAACAAAATATTGCAAATTTTTGCATTGTAAAATTTATCAAAATAGGTTATAATATCTTTAGTTGATTGAGTTTTAATGAAGGATACTATATATTTTTTTACTAATATTTATACACGACTTCATTTTTAAAACGCCCAAAATAGCCCTAAATGGCAAAAAAACGGCATCTCCGCCGCACCGCGTCATTACTGGCTTCGTGGCACTTTTTAAAGTGTCTAACATCACTCAATCAATCTAAATCTTGTTCTCAACCGCAAAGTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGAGCACAGG # Right flank : CTATTATAAAAGAGCAAAAGTACAATACTTTTGCTCTTTTGTTTAAACTATAAAATTAAGAGGTAATTTCTATGGCTTCTATATACATTAATGAAAATGGTGCTTATCTTCATAAAAAAGGCGGTCGTCTTATTATTGAGAAAGATGATATCATTATCAAAGAAATTCCTTTAGAATTAGTAGAAGATATCACTGTAGTTAACACTACGCAAATTTCTTCAGCTTTAATAACTGAATGTTTTGCTAAAGATATACCTATTTTTTGGATATCATCTTCTGGAAATCTTTTAGGTTCACTTTATTCTCCTAAAAATATTGATATCTTTAAACATAAACAACAGTTTGAGCTATTATCAGATAAAAATTTTTATTTTCAATTAGCACAAAATACTGTACATGCCAAAATTCACAATCAAATAACTTTATTGCGTCGCTATAATCGCAATCTCAAAATAGATAAAGTAACTGAATTAATCAATTATATAAAGAATGTGCAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACTAACCCCGCTTTTAGGGGACGGAAAC # Alternate repeat : GTTTAAAACTAACCCCGCTTATAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //