Array 1 67896-68164 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXE01000071.1 Cronobacter sakazakii strain MOD1-Md40g Md40g_S3_L001_R1_001_trimmed_contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67896 28 100.0 32 ............................ GACCAGAAAACGAGCTGATTGAGTATCGCGGC 67956 28 100.0 32 ............................ ACTGAGGGCTGCTACTACACGCAGCAGATGTC 68016 28 100.0 32 ............................ ATTATTCGCGCTCGTTTTTCTGCTCTGCTCCA 68076 28 100.0 32 ............................ CGAGTGATGTAGATCATTACAGCGCCGGGCTC 68136 28 85.7 0 ......................C.T.TC | T [68156] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CCAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAGCCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCACATTTGCCGGTAAAAATGCCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGAAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAACTTCACGCCTGAGCAGCGCGCCGCGACCTGCT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25462-26162 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXE01000125.1 Cronobacter sakazakii strain MOD1-Md40g Md40g_S3_L001_R1_001_trimmed_contig_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 25462 29 100.0 32 ............................. CTATCGTGCGGCTTATTCCGGTATGGGAGGCA 25523 29 100.0 32 ............................. CACGTAATTCACGCGGGCGGCGTATTCCCGAA 25584 29 100.0 32 ............................. GTTTATCCGAACGTTTAGCCGGGAAGCTGCTG 25645 29 96.6 32 ............................T CGTGGAGGGGGATTCCGGTAGAGGCGCGATCG 25706 29 100.0 32 ............................. AGCATCGTCCCCGGCTCTGCCTGGTCTGAGTC 25767 29 100.0 32 ............................. TATCCATTTTCATTCCCTCGATAGTTAGTTTA 25828 29 100.0 33 ............................. GGTACATATCTGTCTATCCCACCTCTCAACGCA 25890 29 100.0 32 ............................. TATGGAACGTAAATTTATCGACTGGCACCCCG 25951 29 100.0 32 ............................. CGCAAAAACGGCGGCCCGGTATCAGCGGGTGG 26012 29 100.0 32 ............................. AAATCAGTTTTGCCGCCCGCTGCGCCCAGCGG 26073 29 93.1 31 .T......T.................... TCGGCGGGATTATTGACGCAGCGACGCCGCG 26133 29 100.0 0 ............................. | T [26135] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAAAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTATAAAGGGTTACCGTTAGTG # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52330-53273 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRXE01000125.1 Cronobacter sakazakii strain MOD1-Md40g Md40g_S3_L001_R1_001_trimmed_contig_125, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52330 29 100.0 32 ............................. CGCTAATTCTATATTTCGTGAGTTATAGGTAG 52391 29 100.0 32 ............................. TATGAATAAGCAGCTATTAGCCCCGGACGGCG 52452 29 100.0 32 ............................. CGGTATTGACGATCCTGATACCTTTTTCAATA 52513 29 100.0 32 ............................. ATGATAGCGAACACGATATGGAGGAAGGACGC 52574 29 100.0 32 ............................. AGTTGGCGGACAATATTAAACGCGATGTGTTT 52635 29 100.0 32 ............................. TCATTGACCTGGGGCCGATTGCCGGTAACCGC 52696 29 100.0 32 ............................. CTCACAACACTCCGGCGTGGTGACGTTGTGAT 52757 29 96.6 32 ..A.......................... GCGCGGCCTGGAGTTTAACCCCGGATACCGCC 52818 29 93.1 32 ..A.....G.................... GTGTGGCGCAGAAAATGAAACGGCTTGAATAC 52879 29 96.6 32 ..A.......................... GTCGAACCTGGTGCCGCGCAGCCCGGCGACGT 52940 29 96.6 32 ..A.......................... CCATAACCGACGGCGGTCATCCCGTTCAGGAC 53001 29 96.6 32 ..A.......................... TGCCCCGCATCGATCAGGTTGCGCAGCCATTG 53062 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 53123 29 96.6 32 ........T.................... CGACACGATCCGCCGCCTGGGTTACGAAAGCG 53184 28 96.6 32 ...........-................. ATTCACGGTAACGTCACCGCCAGCACCGTTTT 53244 29 93.1 0 .....................G......A | C [53249] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCCTTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTGTATCTGTTCTATTTTTGCTAGTTATAATGAAACTCTTTCTATTGCTAACTTTTATGTTTGTTAAGGCTTTGTTGAATAAATAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //