Array 1 245-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNV01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001380 CFSAN001380_contig0024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 183 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 122 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GGCATTCTTTCAAACGTTACTTCTGCTCGCGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 46-991 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNV01000031.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001380 CFSAN001380_contig0030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 107 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 168 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 229 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 290 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 351 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 412 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 473 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 534 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 595 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 656 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 717 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 778 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 839 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 901 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 962 29 96.6 0 ............T................ | A [989] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTTGACCGGACTCGCGGTTATTCAACTAACCGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-585 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNV01000363.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001380 CFSAN001380_contig0362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA G [24] 69 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 130 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 191 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 252 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 313 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 374 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 435 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 496 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 557 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCATG # Right flank : TTTGCGACATTTATATTAATGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1185 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNV01000073.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001380 CFSAN001380_contig0072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 26 89.7 32 ---.......................... TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC G [15] 60 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 121 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 182 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 243 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 304 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 365 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 426 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 487 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 548 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 609 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 670 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 731 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 792 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 853 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 914 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 975 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1036 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1097 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1158 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17809-18388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNV01000073.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001380 CFSAN001380_contig0072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 17809 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17870 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17931 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17992 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 18053 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 18114 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 18175 29 93.1 34 ..........................A.C GTCGTTTTATAGCTGAGAACAAGCTGGCGCTGAT 18238 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 18299 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 18360 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //