Array 1 9080-8873 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZO01000020.1 Xanthomonas fragariae strain PD 4634 isolate PD 4634, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9079 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 9019 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 8959 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 8900 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TAGGAAACCCTGGGCGTATCATGTGTAGTAGTTA # Right flank : TGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACGG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30675-33162 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZO01000224.1 Xanthomonas fragariae strain PD 4634 isolate PD 4634, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30675 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 30735 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 30795 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 30855 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 30915 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 30975 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 31035 28 100.0 32 ............................ TACGGGCATCACGGCGAAAGGCACTCAGCGAA 31095 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 31155 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 31215 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 31275 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 31335 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 31395 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 31455 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 31515 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 31575 28 100.0 32 ............................ ACGACCGCCTCATGGCTTCCTGCGTGCAGCCC 31635 28 100.0 32 ............................ GACGATCTTCTGGGCAAATACCCGCTGAAACT 31695 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 31755 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 31815 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 31875 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 31935 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 31995 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 32055 28 96.4 32 .....A...................... ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 32115 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 32175 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 32235 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 32295 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 32355 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 32415 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 32475 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 32535 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 32595 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 32655 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 32715 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 32775 28 100.0 32 ............................ TGGCTGAAATTTACAAAGGGAGCAGTAACTCG 32835 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 32895 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 32955 28 100.0 32 ............................ TGATGCACTCGGCATACGCGCCACCGGTGGAC 33015 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 33075 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 33135 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //