Array 1 19883-20096 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFEV01000146.1 Klebsiella pneumoniae strain TUM14689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19883 29 96.6 33 ..T.......................... GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC A [19887] 19946 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 20007 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 20068 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACTCATGGCACTAATCCGTCAGTAAATTATTAGGGTCGGAAGGACAAATTAATCAGCGAAAACAGACCTCACGGGGTTGCAGGTAATAAGCCTCCCCCATAGCAGGGTGTGGATAAATATCGCCAGGCATCAGTTTATGTGTTTCAAGAGACCTGACAGGTTCAGATATTGCCATAAATAACCTCTATTCAAATAAAGACGAAAAGATTCCGCCGAAGGCGGCAACGCCTCACAGATGCACAAATAAATTGCGCAACTGTTCACCGTTCAGATCTGGAATTCATAGATTATTTGACGAATTAATTATGACACACCAGAAAGGGGATCCCAGTATGGCCCGGGGACCGGGCCGTGGAATAGAAAGCTTACAGAATATTAGCGATCGATTTTGCCAGCTGGTCTTCAAGAACAGGCTGGGCTTCAGGGAACTTGAGGTTAACTTTATTAGCGTTAGAGACGACGCGAGTCTGGTATTTGTGCTGATTACCCGTTTCAGTACG # Right flank : ATTTCTTGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23705-21420 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFEV01000087.1 Klebsiella pneumoniae strain TUM14689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23704 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 23643 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 23582 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 23521 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 23460 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 23399 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 23338 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 23277 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 23216 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 23155 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 23094 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 23033 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 22972 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 22911 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 22850 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 22789 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 22727 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 22666 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 22605 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 22544 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 22483 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 22421 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 22360 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 22299 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 22238 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 22177 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 22116 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 22055 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 21994 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 21933 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 21872 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 21811 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 21750 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 21689 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 21628 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 21567 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 21506 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 21448 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //