Array 1 2018866-2011315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMKU010000001.1 Pedobacter steynii strain LMG 31390 NODE_1_length_2020725_cov_23.598344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 2018865 44 78.3 30 ...A......T....T..C....T.--....T.C..........A. ACAGGAGTCGTCGTACGCAAACCCAGAACC 2018791 46 97.8 30 ..................C........................... ATCTTCAAGAGCTGAACGATTGGAATATAG 2018715 46 100.0 29 .............................................. TCTTCATGTCTTTAATGTTTTATACCTAT 2018640 46 100.0 30 .............................................. TGTTTTCTACTACCACAGCCCCAATGCTGG 2018564 46 100.0 30 .............................................. AAGCATTACCAGCTGGTTAATACCATACGT 2018488 46 100.0 30 .............................................. AAATGGGTTTTACTTGTACCCAAGAGATCC 2018412 46 100.0 30 .............................................. CTGACTTCCTTAAATCGGAAGTGATTTACC 2018336 46 100.0 29 .............................................. CTGTACTGCTAATTCCGGCACCTCCCCAT 2018261 46 100.0 30 .............................................. GACCCAGTGAAATATAATCACATATTTGCA 2018185 46 100.0 30 .............................................. TGATGGTTTGCTAGATGTTAATCGATTAGA 2018109 46 100.0 30 .............................................. CCCATTCACTTTTTTTGATATCATCACTCT 2018033 46 100.0 30 .............................................. GTAGCGGTATTGTATAGTTGACTTTCGTTG 2017957 46 100.0 30 .............................................. ATATGCCTTAGGAAGCTCGTACGCTAACCA 2017881 46 100.0 30 .............................................. CTTATCTGGCCTTATATCATACTCGAATCC 2017805 46 100.0 30 .............................................. TTACCTTTGTGCATATACTTAGTTGTATAA 2017729 46 100.0 30 .............................................. TTTCGAGTAGCGGGGCTGCGGCGGTAGATG 2017653 46 100.0 30 .............................................. CACCAGCAATAATACTATCGTCATCATCTA 2017577 46 100.0 30 .............................................. GCAGCAGGAGAAGGAATAGAACAACCACTA 2017501 46 100.0 30 .............................................. GCCCTTGCGCGTGGATCGCGCATTGCTTCA 2017425 46 100.0 30 .............................................. CTAGATGAAATGTACACACAATTATCACTA 2017349 46 100.0 30 .............................................. ACTTCATAGCTATGGGAAGCTACAGACTAA 2017273 46 100.0 29 .............................................. TATGGATCGGAAACAAAAAACAAAACGGA 2017198 46 100.0 30 .............................................. AATACAATCACATATTCGCGCAAACCTCAA 2017122 46 100.0 30 .............................................. TGTTAGGCCTACCAGGCGACACATTCGATA 2017046 46 100.0 30 .............................................. GCAGCAGGAGAAGGAATAGAACAACCGCTA 2016970 46 100.0 30 .............................................. TCTCTCTTGACATATTATGCCGTATTGACA 2016894 46 100.0 29 .............................................. ACAGTTATACGTACTACAATGGTAAAGCG 2016819 46 100.0 30 .............................................. CCCTTTATTGTTCAAAGTCAATTCCATAGC 2016743 46 100.0 29 .............................................. TATTTTATACATAATAACACAATACCACA 2016668 46 100.0 30 .............................................. CTTATGCGATGGTTGCACGGAGGCAGAATG 2016592 46 100.0 30 .............................................. ATTGAGCCGGGGGATGATGATAACGCATTG 2016516 46 100.0 30 .............................................. TCCAATTGCAATTACCTTTGCATGAGTAGT 2016440 46 100.0 30 .............................................. CATTTTTTTGACGCTCATACATTTCTTCCT 2016364 46 100.0 30 .............................................. CTGAGGCCTTCTTCCGTCCATTTGCAAGAG 2016288 46 100.0 30 .............................................. AAATGGGCATCCATGAATAACAATTTGATA 2016212 46 100.0 30 .............................................. TTGATCCAAGCGACTTGTCTTGAACTACCG 2016136 46 100.0 30 .............................................. CATATTTGATTTTATTTAAAAACTTGCCAG 2016060 46 100.0 30 .............................................. TTTTACAGCTGAATAATAACTAGTTTTGGT 2015984 46 100.0 29 .............................................. TGGGATATATATAAAAACTACTACGCAAA 2015909 46 100.0 30 .............................................. TGAATACATCTAGTTGTACTTTGAATGATC 2015833 46 100.0 29 .............................................. GGAAAGAAGAATACTACAAACTACTAGAG 2015758 46 100.0 29 .............................................. CAAAAGAAAACAATAGAAGAGTTCAATAA 2015683 46 100.0 30 .............................................. TCTATAGAAATAAACGAAAGTATAGAAGGA 2015607 46 100.0 30 .............................................. TGGTTATCAGTATACCCAACTGGAGGAACA 2015531 46 100.0 30 .............................................. CAATACTAACAATGCAAGCACCAGTAGTGG 2015455 46 100.0 29 .............................................. TCTGGAAAGAACATAAATTATTCATGTGA 2015380 46 100.0 31 .............................................. GCAATAGCAAGTAACGAAATGTTTATGACAC 2015303 46 100.0 30 .............................................. AAACGGTAGCTTCATAACACTAGGAAGCTA 2015227 46 100.0 30 .............................................. CGGCTGATTTAAGCGGAGCAACAGCCGCAA 2015151 46 100.0 30 .............................................. TGCTCATAAGTTTGGGGCCGAAGAGGCCCC 2015075 46 100.0 29 .............................................. ACAGTAAACTATATAGTGAAATACATTCA 2015000 46 100.0 30 .............................................. AAAGAACTGGATAGAATAAGAGAAAAATGT 2014924 46 100.0 30 .............................................. AGAGACGTACAAGCAATAAAAGACCATAGA 2014848 46 100.0 29 .............................................. AACGGTAGCTTCATAACACTAGGAAGCTA 2014773 46 100.0 29 .............................................. CCCACTACAAAACATAGACACTATGAGGG 2014698 46 100.0 29 .............................................. ATATCGTATGCTGCTTGCACTCCTTCTTT 2014623 46 100.0 30 .............................................. ACGAAAGCCCCAGATAGAAGCGCGGCGCTG 2014547 46 100.0 30 .............................................. CCTTGATTTGTTTGTCAGAAAACGACGTTG 2014471 46 100.0 30 .............................................. ATCAACAGAAGAAGGGAAAGAAGAATACTA 2014395 46 100.0 30 .............................................. CTTTTGTAAAACAAAAGAAGCGAAAAAAGG 2014319 46 100.0 30 .............................................. CCTATAGAAATAAACGAAAGTATAGAAGGA 2014243 46 100.0 30 .............................................. TAAGGGAAAATTTTAAATCATGCGAGAGAT 2014167 46 100.0 30 .............................................. TATTTGACAGTGTATGAAATTGAAGCTCCT 2014091 46 100.0 30 .............................................. AACCAAAGGCAAAAACCGGCACTGATGATT 2014015 46 100.0 30 .............................................. TTGGAAACCAAAATGATTGCGATTAATGAG 2013939 46 100.0 30 .............................................. GGAATATCAAAAGAATCGCCATGGTACATA 2013863 46 100.0 30 .............................................. GGCCCTGGCTTACTTACATCTTGTTTATCG 2013787 46 100.0 30 .............................................. TATCAAAGTGATCTATTCAACAACTGGATG 2013711 46 100.0 30 .............................................. AGAAAGCAACAAAACAATACAAGAAAAAAT 2013635 46 100.0 30 .............................................. ATGATAGCAATCATAGGAGCAGTAACAAAC 2013559 46 100.0 30 .............................................. AAGTACTTTGTGTATGATGGCACCATCATT 2013483 46 100.0 30 .............................................. TGAATTGGACTCCAAAGATAAAACCAGGAT 2013407 46 100.0 30 .............................................. CTTTGATACCAGAGAGCGTTAATGATGGGG 2013331 46 100.0 30 .............................................. CAGCAAAGGGATTTACTTATAAAGTAGAGT 2013255 46 100.0 30 .............................................. TCAATTCACGATTTCATTTGACTGAAACTC 2013179 46 100.0 30 .............................................. ACTTCATACAATACCCATCCCATGTTAACA 2013103 46 100.0 30 .............................................. GCGGATATCTTTTAGAGTGGGGATTGGCTA 2013027 46 100.0 30 .............................................. TCTGGTGATCAATGGGAAATAGTCACAACA 2012951 46 100.0 29 .............................................. TGCTTATTGGAGTTGCTGTTATGGCGCTT 2012876 46 100.0 30 .............................................. ATATGCTAAACAAAGAAAGTCATTCACACA 2012800 46 100.0 29 .............................................. GTAATGTGAACACACCAACACATGAACGC 2012725 46 100.0 30 .............................................. CTAAAATGGAAAATGGAAGGAGCCGTAATA 2012649 46 100.0 30 .............................................. GATCCGGTAAAATACAACCACATCTTCGCG 2012573 46 100.0 30 .............................................. CTAACATACAGGAACAGATTTCTTATGAAG 2012497 46 100.0 30 .............................................. TAGATCAATGTTGCTAGTTGTAGTGAAAGT 2012421 46 100.0 30 .............................................. CATTCCTTGCTTCACCATTGATGAAAGTAT 2012345 46 100.0 30 .............................................. CAGCAACCGGGTTTAGCAATATCTATCTGA 2012269 46 100.0 30 .............................................. TTAATTAATCATTTTAAAACTTATTGTTAT 2012193 46 100.0 30 .............................................. CTCCCGATCTTATTTTTCTTCTTCATGCCA 2012117 46 100.0 30 .............................................. TAGTTGCGGAAAACTCTCGTTTAACGATTG 2012041 46 100.0 30 .............................................. TACCCGAAAGAGATACAGCATGTTATTTTA 2011965 46 100.0 30 .............................................. TATTCCTACTGAAAAACTGCCAACTGATTT 2011889 46 100.0 29 .............................................. AACAACACAGGCTGAAAGATTTCTATCTA 2011814 46 100.0 30 .............................................. TCAGTTTTGTTGGAATTTGTTAGAAACAGT 2011738 46 100.0 29 .............................................. AAGCAATGGTATAGCCTTTTTATTGGCTA 2011663 46 100.0 30 .............................................. TAAATTAAATAACATGAACGAATCAGCATT 2011587 46 100.0 29 .............................................. TACGTCGGAGGTAGACACGAGGACAACCC 2011512 46 100.0 30 .............................................. GACCTTTTAGCGGAAATAGACGGGAGCTGG 2011436 46 100.0 30 .............................................. CAATGCAATATTGATCAGGGTTAAGGCTGG 2011360 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 100 46 99.8 30 GTTGTGATTTGCTTTCACTCTTTGAACTACTGATATTTACAACACC # Left flank : ATTGGTTAGGAAATGAAGAAGACTCTATTAATATTCAAGAGATTATTCGGAAACTCAATTTATATAAAACGTTCCTTTCAGAGGTTAGACTAAAAAAAATCACCACGGTCTAACAATTTAATATTGCGTTTCAATCGTAAAGAATTCAATGCTTTATCTGATTTGTATGCACTATTTAAGGAATTAAAATTGGTATAGTACCCCATCAATAAACCATGTTAATTTCGCGCTATTCGGGAGTCGAATATCAAAATCTATTCAGGTATTGTAAAATCGTTGATTTTTGCACAAGGTGCAAATCCCAGAGGGATCACCAAATTTAGAATCAAAAACTTATACCCCCTTTGCAAACAAAAATGTTAGCAGGGGGTATTTTTTCAGGGATACTAAAAATTGTACCGATTCCAAAAAGGCAGTATCCAAAAAATAATTCGGTGAGTAGTTTTAAGAATCTCCCCTACTCACTGACAGAGGCATAACCAACCACCGAAAGCGTTGAA # Right flank : ACCAAATAGCACAACAAGCTATAATTCAGTAGGTTAAACAAGAAATTAGAATTAAAAAAATCCGGACACAAATGTGTCCGGATTTTTATTCTAAGTATTTTTTGTTATTGTAATATTCGTATTTTAGAATAATTCGAGCTGTTGAGGAGTATCTGGCAATGCTTTTTCGTTCTTTCCATAAAATAATTCCATCATACCAAACTGTTTGTCTGTTATGGTCATAATACCAATATGACCTTTCTCAGGCAACAATCGTTTAACCCGATTAATATGTACATCTGCATTCTCCCTGCTACTACAATGTCTCAGATAAATGGAAAACTGAAACATTGCAAACCCATCCCTTAAAATTTCCTTACGAAATTTAGAAGCAATACTTCGTTCTTTTTTAGTTTCGGTTGGCAGATCAAAAAAAACTAATACCCACAAAATTCGATATTCATTTAAACGCATCAATTAAAATAGCAATTCATCAAAAGCTTCTTGCTCCGATCGGTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCACTCTTTGAACTACTGATATTTACAACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //