Array 1 67880-66594 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDO01000021.1 Dickeya dianthicola strain S4.16.03.LID contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67879 32 100.0 36 ................................ GCGAGTACTTGTAGTCTTAATCACAAGCAGTACCGC 67811 32 100.0 33 ................................ CTAACTACTGCCGATGTGTTGAAACTACGCTTC 67746 32 100.0 34 ................................ ACTCATCACCTGACTTGCTTTCTTACGTGCTCTG 67680 32 100.0 36 ................................ GTAGTAAGTCATGATAGTCACCTCATTGAGTAAGCC 67612 32 100.0 34 ................................ GTTCGCTACGCTCTACGTGTCGTGGGTGGTGGGT 67546 32 100.0 34 ................................ TTCGCAGGACTGATACCCACTGGTATCGCCCATG 67480 32 100.0 33 ................................ ACCAAGATACGCTGGCCGTGCATCACCTCCTGA 67415 32 100.0 33 ................................ AAATTAATCGCTGTTAAAGCTATCCCTGCACAG 67350 32 100.0 35 ................................ AAGTGCATCAGTCTTGTTACCTCCACCCGTTCCCG 67283 32 100.0 34 ................................ TTCGTCAGTTGCCTGTCCATCTTGATGTCGCCAC 67217 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 67152 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 67085 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 67019 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 66953 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 66887 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 66821 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 66755 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 66690 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 66624 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.1 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 664-95 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDO01000096.1 Dickeya dianthicola strain S4.16.03.LID contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 663 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 603 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 543 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 483 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 423 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 363 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 303 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 243 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 183 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 123 27 89.3 0 .......................-..CG | GG [100] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9379-9586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDO01000096.1 Dickeya dianthicola strain S4.16.03.LID contig_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9379 28 100.0 32 ............................ ATAGCGTCATCCGTGGCGCTATGTGAGTATTA 9439 28 100.0 32 ............................ ACATCAGCACATCTTGCGCATTGTACTCTGTA 9499 28 100.0 32 ............................ GTTTGCTGCCGCATCTGTCGTGACTGCTCAAT 9559 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GTACACAGCATGGCGCGGAAATCAAGTGTTACGTTCACTGCCGAGTAGGCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //